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Report for CCDS28041.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28041.2 Public Mus musculus 16 Klhl6 23 108 98 CCDS HistoryNCBI Gene:239743Re-query CCDS DB by CCDS ID:28041.2See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28041.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28041.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058839.9 ENSMUSP00000053023.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058839.9Link to Ensembl Protein Viewer:ENSMUSP00000053023.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058839Re-query CCDS DB by Protein ID:ENSMUSP00000053023
Original member NCBI NM_183390.3 NP_899246.2 Updated not alive Link to Nucleotide Sequence:NM_183390.3Link to Protein Sequence:NP_899246.2Re-query CCDS DB by Nucleotide ID:NM_183390Re-query CCDS DB by Protein ID:NP_899246
Current member NCBI NM_183390.4 NP_899246.2 Accepted alive Link to Nucleotide Sequence:NM_183390.4Link to Protein Sequence:NP_899246.2Re-query CCDS DB by Nucleotide ID:NM_183390Re-query CCDS DB by Protein ID:NP_899246Link to BLAST:NP_899246.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899246.2 619 Q6V595 619 100% 0 0

Chromosomal Locations for CCDS 28041.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19946991 19947292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19948085 19948298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19949450 19949652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19953453 19953690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19956904 19957353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19965934 19966099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19982717 19983003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGCAGGACAAAGAGGCGCCTGCACCATGAGCGATGTGGTAGAGAGGAGCTTGGAAGGACCCTTAGCAC
TGACTACAGACAAGTCCTCCCAGAAAAGGGGAGACTTGGTGGAAATATTAACTGGGGAGAAGGTAAAATT
TGACGACACGAGACTTTCTTTAATTCTTCAGAACGGCCTGGAGACGCTGAGAGAGGAAAATGCTTTGACA
GACGTCATCTTGTGTGTGGATGTTCAGGAATTCTCTTGCCATCGAGTGGTGCTTGCTGCAGCCAGCAACT
ATTTCAGGGCCATGTTCTGCAACGACTTAAAAGAAAAGTATGAGAAGAGGATCATTATTAAAGGGGTGGA
TGCTGAGACCATGCACACTCTCCTGGTCTACACATACACAAGCAAGGCTCTGATCACCAAGCAGAATGTT
CAGCGGGTTCTGGAGGCTGCCAACCTTTTCCAGTTTTTACAGCTGGTGGATGCCTGTGCCAGCTTTCTCA
CAGAAGCATTGAACCCGGAAAATTGTATTGGAATACTGAGGCTGGCAGACACACATTCTTTGGACAGTTT
AAAGATGCAAGTCCAAAGTTACATCATTCAAAACTTTGTTCAGATTCTGAATTCCGAGGAGTTCCTTGAA
CTTCCTGTGGACACTTTGTACCACATCTTGAGGAGTGACGACCTGTGTGTGACTGAAGAGGCTCAGGTGT
TTGAGACTGTGATGAGCTGGGTCCGGCACAAACAATCAGAACGACTCTGCCTGCTCCCTTGTGTCCTCGA
GAATGTGCGTTTACCACTTCTGGATCCGTGGTACTTCGTGGAGATGGTTGAAGCAGACCCTCTTATTAGA
CAGTGCCCTGAAGTCTTCCCGCTGCTTCAGGAAGCCAGGATGTACCACCTTTCTGGCAATGAGATCATTT
CGGAGCGCACCAAGCCCAGGATGCATGAGTTCCAGTCTGAGGTGTTCATGATTATTGGCGGCTGTACAAA
GGATGAACGATTTGTGGCAGAGGTAACCTGCCTGGACCCCCTGAGGCGCAGTCGCCTGGAGGTGGCCAAG
CTCCCACTGACAGAGCATGAACTGGAGAGTGAGAATAAGAAGTGGGTGGAGTTTGCATGTGTGACATTAA
AAAATGAGGTCTACATATCAGGTGGCAAAGAAACACAGCATGATGTTTGGAAGTACAATTCCTCCATCAA
CAAATGGATTCAGATCGAATATTTAAACATAGGTCGCTGGAGGCATAAGATGGTCGTATTGGGTGGCAAA
GTCTATGTACTTGGGGGTTTTGATGGCTTACAAAGAATCAACAATGTGGAGACATATGACCCCTTCCACA
ACTGCTGGTCAGAGGCTGCACCCCTCCATGTCCATGTCAGTTCTTTTGCAGCTACCAGCCACAAGAAGAA
GTTGTATGTCATTGGAGGAGGACCCAATGGAAAGCTTGCCACAGACAAGACTCAGTGTTATGATCCTTCC
ACCAATAAATGGGTTTTGAAGTCAGCCATGCCAGTAGAGGCTAAATGCATCAATGCAGTGAGTTTCCAGG
ATCACATCTATGTTGTTGGTGGTGCCATGAGAGCACTCTACGCTTATAGCCCTCTGGAAGACAGCTGGTG
TCTGGTGACACAGCTCAGCCATGAGCGAGCCAGCTGTGGCATCGCACCCTGCAACAACAAGCTGTATATC
ACGGGTGGGAGGGACGAGAAGAATGAGGTCATTGCCACTGTGCTCTGCTGGGACCCTGAGGCTCAGAAGC
TGACTGAGGAATGTGTGCTGCCACGAGGAGTATCACATCATGGCAGTGTTACCATCAGGAAGTCATATAC
TCACATCCGGAGGGTTGTCCCTGGAGCAGTGTCTGTGTGA

Translation (619 aa):
MAGQRGACTMSDVVERSLEGPLALTTDKSSQKRGDLVEILTGEKVKFDDTRLSLILQNGLETLREENALT
DVILCVDVQEFSCHRVVLAAASNYFRAMFCNDLKEKYEKRIIIKGVDAETMHTLLVYTYTSKALITKQNV
QRVLEAANLFQFLQLVDACASFLTEALNPENCIGILRLADTHSLDSLKMQVQSYIIQNFVQILNSEEFLE
LPVDTLYHILRSDDLCVTEEAQVFETVMSWVRHKQSERLCLLPCVLENVRLPLLDPWYFVEMVEADPLIR
QCPEVFPLLQEARMYHLSGNEIISERTKPRMHEFQSEVFMIIGGCTKDERFVAEVTCLDPLRRSRLEVAK
LPLTEHELESENKKWVEFACVTLKNEVYISGGKETQHDVWKYNSSINKWIQIEYLNIGRWRHKMVVLGGK
VYVLGGFDGLQRINNVETYDPFHNCWSEAAPLHVHVSSFAATSHKKKLYVIGGGPNGKLATDKTQCYDPS
TNKWVLKSAMPVEAKCINAVSFQDHIYVVGGAMRALYAYSPLEDSWCLVTQLSHERASCGIAPCNNKLYI
TGGRDEKNEVIATVLCWDPEAQKLTEECVLPRGVSHHGSVTIRKSYTHIRRVVPGAVSV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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