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Report for CCDS28332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28332.1 Public Mus musculus 16 Mrps6 23 108 98 CCDS HistoryNCBI Gene:121022Re-query CCDS DB by CCDS ID:28332.1Re-query CCDS DB by GeneID:121022See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047429.8 ENSMUSP00000037631.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047429.8Link to Ensembl Protein Viewer:ENSMUSP00000037631.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047429Re-query CCDS DB by Protein ID:ENSMUSP00000037631
Original member Current member NCBI NM_080456.1 NP_536704.1 Accepted alive Link to Nucleotide Sequence:NM_080456.1Link to Protein Sequence:NP_536704.1Re-query CCDS DB by Nucleotide ID:NM_080456Re-query CCDS DB by Protein ID:NP_536704Link to BLAST:NP_536704.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536704.1 125 P58064 125 100% 0 0

Chromosomal Locations for CCDS 28332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92058436 92058480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92099594 92099733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92111733 92111925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCCCCGCTACGAGTTGGCTTTGATTCTGAAAGCCATGCGGCGGCCAGAGACCGCTGCTGCTTTGAAAC
GTACAATAGAATCCCTGATGGACCGAGGAGCCATAGTGAGGAACTTGGAAAGCCTGGGTGAGCGTGCGCT
CCCCTACAGGATCTCGAGTCACAGCCAGCAGCACAGCCGAGGAGGGTATTTCCTGGTGGATTTTTATGCT
CCGACAAGTGCTGTGGAGAACATACTGGAACACTTGGCGCGAGACATTGACGTGGTTAGACCAAATATTG
TGAAACACCCTCTGACCCAGGAAGTAAAAGAGTGTGACGGCATAGTCCCAGTCCCACTTGAAGAAAAACT
GTATTCAACAAAGAGGAGGAAGAAGTGA

Translation (125 aa):
MPRYELALILKAMRRPETAAALKRTIESLMDRGAIVRNLESLGERALPYRISSHSQQHSRGGYFLVDFYA
PTSAVENILEHLARDIDVVRPNIVKHPLTQEVKECDGIVPVPLEEKLYSTKRRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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