NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23238.1 Public Mus musculus 9 Islr2 23 108 98 CCDS HistoryNCBI Gene:320563Re-query CCDS DB by CCDS ID:23238.1Re-query CCDS DB by GeneID:320563See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114144.8 ENSMUSP00000109781.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114144.8Link to Ensembl Protein Viewer:ENSMUSP00000109781.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114144Re-query CCDS DB by Protein ID:ENSMUSP00000109781
Original member Current member EBI ENSMUST00000170421.7 ENSMUSP00000127228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170421.7Link to Ensembl Protein Viewer:ENSMUSP00000127228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170421Re-query CCDS DB by Protein ID:ENSMUSP00000127228
Original member Current member EBI ENSMUST00000165276.1 ENSMUSP00000129328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165276.1Link to Ensembl Protein Viewer:ENSMUSP00000129328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165276Re-query CCDS DB by Protein ID:ENSMUSP00000129328
Original member Current member EBI ENSMUST00000163897.7 ENSMUSP00000130322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163897.7Link to Ensembl Protein Viewer:ENSMUSP00000130322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163897Re-query CCDS DB by Protein ID:ENSMUSP00000130322
Original member Current member EBI ENSMUST00000215950.1 ENSMUSP00000149095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215950.1Link to Ensembl Protein Viewer:ENSMUSP00000149095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215950Re-query CCDS DB by Protein ID:ENSMUSP00000149095
Original member Current member NCBI NM_001161536.1 NP_001155008.1 Accepted alive Link to Nucleotide Sequence:NM_001161536.1Link to Protein Sequence:NP_001155008.1Re-query CCDS DB by Nucleotide ID:NM_001161536Re-query CCDS DB by Protein ID:NP_001155008Link to BLAST:NP_001155008.1
Original member Current member NCBI NM_001161537.1 NP_001155009.1 Accepted alive Link to Nucleotide Sequence:NM_001161537.1Link to Protein Sequence:NP_001155009.1Re-query CCDS DB by Nucleotide ID:NM_001161537Re-query CCDS DB by Protein ID:NP_001155009Link to BLAST:NP_001155009.1
Original member Current member NCBI NM_001161538.1 NP_001155010.1 Accepted alive Link to Nucleotide Sequence:NM_001161538.1Link to Protein Sequence:NP_001155010.1Re-query CCDS DB by Nucleotide ID:NM_001161538Re-query CCDS DB by Protein ID:NP_001155010Link to BLAST:NP_001155010.1
Original member Current member NCBI NM_001161539.1 NP_001155011.1 Accepted alive Link to Nucleotide Sequence:NM_001161539.1Link to Protein Sequence:NP_001155011.1Re-query CCDS DB by Nucleotide ID:NM_001161539Re-query CCDS DB by Protein ID:NP_001155011Link to BLAST:NP_001155011.1
Original member Current member NCBI NM_001161540.1 NP_001155012.1 Accepted alive Link to Nucleotide Sequence:NM_001161540.1Link to Protein Sequence:NP_001155012.1Re-query CCDS DB by Nucleotide ID:NM_001161540Re-query CCDS DB by Protein ID:NP_001155012Link to BLAST:NP_001155012.1
Original member Current member NCBI NM_001161541.1 NP_001155013.1 Accepted alive Link to Nucleotide Sequence:NM_001161541.1Link to Protein Sequence:NP_001155013.1Re-query CCDS DB by Nucleotide ID:NM_001161541Re-query CCDS DB by Protein ID:NP_001155013Link to BLAST:NP_001155013.1
Original member Current member NCBI NM_177193.5 NP_796167.2 Accepted alive Link to Nucleotide Sequence:NM_177193.5Link to Protein Sequence:NP_796167.2Re-query CCDS DB by Nucleotide ID:NM_177193Re-query CCDS DB by Protein ID:NP_796167Link to BLAST:NP_796167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155008.1 745 Q5RKR3 745 100% 0 0
NP_001155009.1 745 Q5RKR3 745 100% 0 0
NP_001155010.1 745 Q5RKR3 745 100% 0 0
NP_001155011.1 745 Q5RKR3 745 100% 0 0
NP_001155012.1 745 Q5RKR3 745 100% 0 0
NP_001155013.1 745 Q5RKR3 745 100% 0 0
NP_796167.2 745 Q5RKR3 745 100% 0 0

Chromosomal Locations for CCDS 23238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58197738 58199975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGGGGCCCTTTGGAGCCCTGTGTTTGGCCTGGGCTTTGCTAGGAGTGGTCAGAGCGTGTCCCGAGCCTT
GCGCCTGTGTTGACAAGTACGCCCACCAGTTTGCAGACTGTGCCTACAAGGAGCTGCGCGAGGTCCCAGA
AGGACTGCCAGCCAACGTGACCACGCTTAGTCTGTCTGCCAACAAGATTACGGTACTAAGGCGGGGGGCC
TTCGTCAACGTCACGCAGGTCACTTCGCTGTGGCTGGCTCACAGTGAGGTACGCACGGTAGAGTCAGGGG
CATTGGCAGTGCTGAGTCAGCTCAAGAACCTCGACCTAAGCCACAACCTTATATCCAACTTCCCTTGGAG
CGACCTTCGTAACTTGAGCGCGCTGCAGCTGCTGAAAATGAACCACAACCGTCTGGGATCGCTGCCCCGG
GATGCACTCGGCGCGCTCCCGGACCTGCGCTCTCTGCGCATCAACAACAACCGGCTGCGTACCCTGGAGC
CCGGCACGTTCGACGCACTAAGCGCGCTGTCTCACCTGCAACTCTATCACAACCCCTTCCACTGCAGCTG
TGGTCTCGTGTGGCTGCAGGCCTGGGCAGCGAGCACCCGGGTCTCCTTACCGGAGCCCGATTCTATAGCG
TGCGCCTCGCCCCCTGAGCTGCAGGGCGTGCCCGTGCACCGCCTGCCCGCCCTGCCCTGCGCACCCCCCA
GCGTGCGTCTGAGCGCAGAGCCGCCGCCTGAGGCACCTGGCACCCCTCTGCGCGCAGGCTTGGCTTTCAT
GTTACATTGCGTCGCCGAAGGCCACCCCACACCCCGCCTGCAATGGCAACTTCAGATCCCGGGTGGCACT
GTAGTCTTAGTGCCACCGGTTCTCAGCAAGGAAGAAGATGGAGGAGATAAGGTGGAGGATGGAGAGGGTG
ACGGAGATGAGGACCTGCCTACGCAGACTGAAGCGCCAACCCCAACTCCAGCACCTGCTTGGCCAGCGCC
TCCAGCCACCCCGCGCTTCTTGGCCCTCGCAAATGGCTCTCTGTTGGTGCCCCTTCTGAGTGCCAAGGAG
GCAGGCATCTACACTTGTCGTGCACACAATGAGCTGGGCACCAACTCAACGTCCTTACGGGTGACGGTGG
CTGCAGCGGGGCCGCCAAAACACGCTCCTGGAACAGGGGAAGAACCTGATGCGCAGGTCCCGACCTCTGA
GCGCAAGGCCACCACTAAGGGCCGTAGCAACAGCGTCCTGCCCTTCAAGCCTGAAGGCAAAACCAAAGGC
CAAGGTCTTGCCCGAGTCAGCGTGCTTGGGGAAATCGAGGCAGAGCTGGAGGAGACAGATGAAGGAGAGC
AGATGGAAGGTCAGATCCCTGCAGATCCGATGGGAGAGAAGCACTGTGGCCATGGGGACCCCTCTCGCTA
TGTGTCTAACCATGCATTCAACCAGAGCTCAGATCTCAAGCCGCACGTTTTTGAGTTGGGCGTCATCGCG
CTGGATGTAGCAGAGCGTGAGGCTCGGGTGCAGCTGACGCCTCTTGCTGCGCGCTGGGGCCCTGGGCCAG
ATGGTGCTAGCGGAGCGCGGCGGCCGGGGAGGCGGCCACTGCGCCTACTCTATCTGTGTCCTGCGGGGGG
TGGCACGGCAGTTCAGTGGTCACGAGTGGAAGAGGGGGTCAATGCCTACTGGTTTCGCGGCCTGCGGCCT
GGCACCAACTACTCCGTATGCCTGGCACTGGCGGGCGAGGCGTGTCACGTGCAGGTGGTGTTTTCTACCA
AGAAAGAACTGCCGTCCCTGCTGGTTATCGTGACCGTGAGTGTTTTTCTCCTGGTGCTGGCCACCGTGCC
CCTGCTGGGTGCCGCCTGCTGCCATCTGCTGGCCAAACATCCGGGCAAACCCTACCGTTTAATCCTGAGG
CCACAGGCCCCGGACCCTATGGAGAAACGCATCGCGGCCGATTTCGATCCGCGTGCTTCCTACCTTGAGT
CTGAGAAAAGCTACCCTGCTCGTGGCGAGGCGGGAGGTGAGGAGCCAGAGGAGGTCCCGGAGGAAGGCCT
GGATGAAGATGTGGAGCAGGGGGACCCAAGCGGGGACCTTCAGAGAGAGGAAAGCCTGGCGGGTTGCTCA
TTGGTGGAGTCTCAGTCCAAGGCCAACCAAGAGGAGTTCGAGGCTGGCTCGGAGTACAGCGATCGGCTGC
CCCTGGGAGCGGAAGCAGTCAACATCGCCCAGGAAATAAACGGCAACTACAGGCAGACAGCGGGCTGA

Translation (745 aa):
MGPFGALCLAWALLGVVRACPEPCACVDKYAHQFADCAYKELREVPEGLPANVTTLSLSANKITVLRRGA
FVNVTQVTSLWLAHSEVRTVESGALAVLSQLKNLDLSHNLISNFPWSDLRNLSALQLLKMNHNRLGSLPR
DALGALPDLRSLRINNNRLRTLEPGTFDALSALSHLQLYHNPFHCSCGLVWLQAWAASTRVSLPEPDSIA
CASPPELQGVPVHRLPALPCAPPSVRLSAEPPPEAPGTPLRAGLAFMLHCVAEGHPTPRLQWQLQIPGGT
VVLVPPVLSKEEDGGDKVEDGEGDGDEDLPTQTEAPTPTPAPAWPAPPATPRFLALANGSLLVPLLSAKE
AGIYTCRAHNELGTNSTSLRVTVAAAGPPKHAPGTGEEPDAQVPTSERKATTKGRSNSVLPFKPEGKTKG
QGLARVSVLGEIEAELEETDEGEQMEGQIPADPMGEKHCGHGDPSRYVSNHAFNQSSDLKPHVFELGVIA
LDVAEREARVQLTPLAARWGPGPDGASGARRPGRRPLRLLYLCPAGGGTAVQWSRVEEGVNAYWFRGLRP
GTNYSVCLALAGEACHVQVVFSTKKELPSLLVIVTVSVFLLVLATVPLLGAACCHLLAKHPGKPYRLILR
PQAPDPMEKRIAADFDPRASYLESEKSYPARGEAGGEEPEEVPEEGLDEDVEQGDPSGDLQREESLAGCS
LVESQSKANQEEFEAGSEYSDRLPLGAEAVNIAQEINGNYRQTAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH