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Report for CCDS48784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48784.1 Public Mus musculus 11 Mrnip 23 108 98 CCDS HistoryNCBI Gene:68067Re-query CCDS DB by CCDS ID:48784.1Re-query CCDS DB by GeneID:68067See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020647.9 ENSMUSP00000020647.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020647.9Link to Ensembl Protein Viewer:ENSMUSP00000020647.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020647Re-query CCDS DB by Protein ID:ENSMUSP00000020647
Original member Current member NCBI NM_026543.3 NP_080819.2 Accepted alive Link to Nucleotide Sequence:NM_026543.3Link to Protein Sequence:NP_080819.2Re-query CCDS DB by Nucleotide ID:NM_026543Re-query CCDS DB by Protein ID:NP_080819Link to BLAST:NP_080819.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080819.2 335 Q9D1F5 335 100% 0 0

Chromosomal Locations for CCDS 48784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50174886 50174951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50176827 50176886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50182492 50182580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50194208 50194283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50196944 50197092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50197619 50197703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50199536 50200018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCGCCGGCTCAGCAGTCTCGGGTTCTACGGTGCTGCAGCTGCCACATCTTTCAGGCGCATCAGGTGA
AGAAGAGTCTCAAATGGACATGCAAGGCTTGTGGAGAGAAGCAGTCATTTGTTCGGGCTTACGGTGAAGG
CTCTGGTGCTGACTGCAGACGCCATGTCCAAAAGCTAAATCTGCTGCAAGGACAAGTGTCAGAGCTGTCA
CTCAGGTCTGTGGAGGAAGCTGTAAATGGCAGTGAAGAAGAAAATGCAGGCCCTCTGCAGGCCGAGGCTG
GGAGTCAGCAGGCACCGTCTAAGCCCCTCGAGTCCCGTTGGTTGAAGTATCTGGACAAGGGCTGCGAGGA
CCAGGAGCTGGACAGAGGGAGACCAGCTCTTAAGACACAGCTTTCAACCAGTGCTGAGCGGCCAAGCAGT
CCAGCCCAACCCAGGAAGAGGAAATGGAATCAGCGCACAGGGCAGCCTGCACACAGCCTGCATGGCCAGG
GTGTGGACAGTGTTGAAGACAACTTTGAACACCAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCAAGG
CACCAGCCCTGCCCTCAGTACTGCGAACCACACCAGAGAGCTCGGTTTTCCTAGGTGGAAACTACCAAGT
CCTGTTACACAAGTTAATGCCCCATCTTCTAAATGGGCACGGTTTCTCCTGGCACCTGGAAATAGTCCTC
AAGTGGATGAGAAACCAAGTCCTCTGCAGGAGGCCACCATGCTAGCTGACCTGGCACAAGGGACTGTTGA
GAACAAGACTCCAGTGGAAGGCCACTTCAGCAGAGCCCCTGCCATTAGGCCTCCTCAAGCCATTCACACT
ACCACCCCACAACTGGACAGACCTGACAGGAAGACCCGAGAGCAGCCAAGGGACATGGGGACTCCTCGAG
CAGATGGTAGGCCTTTGGCTCAAGGGACCCAGAAGGCTCCACCCTTGCAACTGCACAACCTCTTTACAAC
CGGAGAGGACTTTGATGATGACCTGTAG

Translation (335 aa):
MAPAQQSRVLRCCSCHIFQAHQVKKSLKWTCKACGEKQSFVRAYGEGSGADCRRHVQKLNLLQGQVSELS
LRSVEEAVNGSEEENAGPLQAEAGSQQAPSKPLESRWLKYLDKGCEDQELDRGRPALKTQLSTSAERPSS
PAQPRKRKWNQRTGQPAHSLHGQGVDSVEDNFEHQDSTGLFGTEQQGTSPALSTANHTRELGFPRWKLPS
PVTQVNAPSSKWARFLLAPGNSPQVDEKPSPLQEATMLADLAQGTVENKTPVEGHFSRAPAIRPPQAIHT
TTPQLDRPDRKTREQPRDMGTPRADGRPLAQGTQKAPPLQLHNLFTTGEDFDDDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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