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Report for CCDS36500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36500.1 Public Mus musculus 12 Zdhhc22 23 108 98 CCDS HistoryNCBI Gene:238331Re-query CCDS DB by CCDS ID:36500.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095521.2 ENSMUSP00000093177.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095521.2Link to Ensembl Protein Viewer:ENSMUSP00000093177.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095521Re-query CCDS DB by Protein ID:ENSMUSP00000093177
Original member Current member EBI ENSMUST00000222543.1 ENSMUSP00000152660.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222543.1Link to Ensembl Protein Viewer:ENSMUSP00000152660.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222543Re-query CCDS DB by Protein ID:ENSMUSP00000152660
Original member NCBI NM_001080943.2 NP_001074412.1 Updated not alive Link to Nucleotide Sequence:NM_001080943.2Link to Protein Sequence:NP_001074412.1Re-query CCDS DB by Nucleotide ID:NM_001080943Re-query CCDS DB by Protein ID:NP_001074412
Current member NCBI NM_001080943.3 NP_001074412.1 Accepted alive Link to Nucleotide Sequence:NM_001080943.3Link to Protein Sequence:NP_001074412.1Re-query CCDS DB by Nucleotide ID:NM_001080943Re-query CCDS DB by Protein ID:NP_001074412Link to BLAST:NP_001074412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074412.1 263 A0PK84 263 100% 0 0

Chromosomal Locations for CCDS 36500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86983381 86983646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86988151 86988676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGCTGGCCTTGCGGCTGCTCAACGTGGTAGCCCCCGCCTACTTTCTTTGCATTTCCCTGGTGACCTTCG
TACTGCAGCTCTTCCTCTTCCTGCCCAGCATGCGTGAGGACCCCACAGCCACCCCGCTCTTCTCGCCTGC
TGTGCTTCACGGGGCGCTCTTCCTGTTCCTCTCAGCCAATGCCCTGGGCAATTACGTCCTGGTCATCCAG
AACTCCCCAGACGACCTGGGCACCTGCCAGGGGACCATGTCCCAGAGACCTCAGTGCCCACCGCCCAGCA
CCCACTTCTGCCGAGTGTGTTCCCGAGTCACGCTGAGGCACGACCATCACTGTTTCTTCACCGGCAACTG
CATCGGCAGCAGAAACATGCGCAACTTCATCCTGTTCTGCCTCTACACCTCTCTGGCCTGCCTTTACTCC
ATGGTGGCTGGAGTGGCCTACATCTCAGCTGTCCTTTCCATCTCCTTCGCCCACCCCCTGGCCTTCCTTA
CGCTCCTGCCCACTTCAATCAGCCAGTTCTTCTCCGGAGCTGTCCTCGGTTCTGACATGTTCGTCATCCT
CATGCTCTACCTCTGGTTTGCTGTCGGCCTGGCCTGCGCCGGTTTCTGCTGCCACCAACTGCTGTTGATC
CTCCGGGGGCAAACCCGCTACCAGGTTCGAAAGGGGATGGCTGTAAGAGCCCGACCCTGGCGCAAGAACT
TACAGGAGGTCTTCGGAAAGAGGTGGCTGCTTGGCTTGCTGGTACCCATGTTCAATGTCGGCACCGAAAG
CTCGAAGCAGCAGGACAAATAG

Translation (263 aa):
MLALRLLNVVAPAYFLCISLVTFVLQLFLFLPSMREDPTATPLFSPAVLHGALFLFLSANALGNYVLVIQ
NSPDDLGTCQGTMSQRPQCPPPSTHFCRVCSRVTLRHDHHCFFTGNCIGSRNMRNFILFCLYTSLACLYS
MVAGVAYISAVLSISFAHPLAFLTLLPTSISQFFSGAVLGSDMFVILMLYLWFAVGLACAGFCCHQLLLI
LRGQTRYQVRKGMAVRARPWRKNLQEVFGKRWLLGLLVPMFNVGTESSKQQDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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