NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43014.1 Public Homo sapiens 22 APOL2 24 110 108 CCDS HistoryNCBI Gene:23780Re-query CCDS DB by CCDS ID:43014.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43014.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249066.10 ENSP00000249066.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000249066.10Link to Ensembl Protein Viewer:ENSP00000249066.6Re-query CCDS DB by Nucleotide ID:ENST00000249066Re-query CCDS DB by Protein ID:ENSP00000249066
Original member Current member EBI ENST00000358502.10 ENSP00000351292.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358502.10Link to Ensembl Protein Viewer:ENSP00000351292.5Re-query CCDS DB by Nucleotide ID:ENST00000358502Re-query CCDS DB by Protein ID:ENSP00000351292
Original member Current member NCBI NM_030882.4 NP_112092.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030882.4Link to Protein Sequence:NP_112092.2Re-query CCDS DB by Nucleotide ID:NM_030882Re-query CCDS DB by Protein ID:NP_112092Link to BLAST:NP_112092.2
Original member Current member NCBI NM_145637.3 NP_663612.2 Accepted alive Link to Nucleotide Sequence:NM_145637.3Link to Protein Sequence:NP_663612.2Re-query CCDS DB by Nucleotide ID:NM_145637Re-query CCDS DB by Protein ID:NP_663612Link to BLAST:NP_663612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112092.2 337 Q9BQE5 337 100% 0 0
NP_663612.2 337 Q9BQE5 337 100% 0 0

Chromosomal Locations for CCDS 43014.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36227404 36228280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36231340 36231466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36233153 36233162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGAACCCAGAGAGCAGTATCTTTATTGAGGATTACCTTAAGTATTTCCAGGACCAAGTGAGCAGAGAGA
ATCTGCTACAACTGCTGACTGATGATGAAGCCTGGAATGGATTCGTGGCTGCTGCTGAACTGCCCAGGGA
TGAGGCAGATGAGCTCCGTAAAGCTCTGAACAAGCTTGCAAGTCACATGGTCATGAAGGACAAAAACCGC
CACGATAAAGACCAGCAGCACAGGCAGTGGTTTTTGAAAGAGTTTCCTCGGTTGAAAAGGGAGCTTGAGG
ATCACATAAGGAAGCTCCGTGCCCTTGCAGAGGAGGTTGAGCAGGTCCACAGAGGCACCACCATTGCCAA
TGTGGTGTCCAACTCTGTTGGCACTACCTCTGGCATCCTGACCCTCCTCGGCCTGGGTCTGGCACCCTTC
ACAGAAGGAATCAGTTTTGTGCTCTTGGACACTGGCATGGGTCTGGGAGCAGCAGCTGCTGTGGCTGGGA
TTACCTGCAGTGTGGTAGAACTAGTAAACAAATTGCGGGCACGAGCCCAAGCCCGCAACTTGGACCAAAG
CGGCACCAATGTAGCAAAGGTGATGAAGGAGTTTGTGGGTGGGAACACACCCAATGTTCTTACCTTAGTT
GACAATTGGTACCAAGTCACACAAGGGATTGGGAGGAACATCCGTGCCATCAGACGAGCCAGAGCCAACC
CTCAGTTAGGAGCGTATGCCCCACCCCCGCATGTCATTGGGCGAATCTCAGCTGAAGGCGGTGAACAGGT
TGAGAGGGTTGTTGAAGGCCCCGCCCAGGCAATGAGCAGAGGAACCATGATCGTGGGTGCAGCCACTGGA
GGCATCTTGCTTCTGCTGGATGTGGTCAGCCTTGCATATGAGTCAAAGCACTTGCTTGAGGGGGCAAAGT
CAGAGTCAGCTGAGGAGCTGAAGAAGCGGGCTCAGGAGCTGGAGGGGAAGCTCAACTTTCTCACCAAGAT
CCATGAGATGCTGCAGCCAGGCCAAGACCAATGA

Translation (337 aa):
MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNR
HDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPF
TEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV
DNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATG
GILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH