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Report for CCDS24796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24796.1 Public Mus musculus 11 Mief2 23 108 98 CCDS HistoryNCBI Gene:237781Re-query CCDS DB by CCDS ID:24796.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018743.4 ENSMUSP00000018743.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018743.4Link to Ensembl Protein Viewer:ENSMUSP00000018743.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018743Re-query CCDS DB by Protein ID:ENSMUSP00000018743
Original member Current member NCBI NM_001009927.2 NP_001009927.1 Accepted alive Link to Nucleotide Sequence:NM_001009927.2Link to Protein Sequence:NP_001009927.1Re-query CCDS DB by Nucleotide ID:NM_001009927Re-query CCDS DB by Protein ID:NP_001009927Link to BLAST:NP_001009927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009927.1 454 Q5NCS9 454 100% 0 0

Chromosomal Locations for CCDS 24796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60730289 60730435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60730630 60730792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60730916 60731970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGCAGAGTTCTCCCAGAAGCAGAGGAAACAGAGCGGCAGCGAGGGCCTGGGCAGTGTGGTGGACTTCC
TCTTGGCTAATGCTCGATTGGTGCTAGGTGTGGGCGGGGCTGCAGTGCTGGGCATTGCTACCCTGGCTGT
AAAGCGGCTCATCGACAGGGCCACCAGCCCTCCAGATGAGGATGACACCAAGGGGGACAGCTGGAAGGAA
CTGAGCCTGCTGAGAGCCACATCGCCCCAAAAGCCCCAACCCCCTCCTGCTGCCTTCAGCCAGCCCCTAG
CTACTGGGTCCCCCTCCCCCTCTGTGCCAGTGGAGCCCACGCCCATTCATTCTCCCACGACACCTAAGTT
CAGCACTATAGCACCCCTGTGCCTGACGTTCCAGGAGAGGCTGCTGGCCTTCGAGCGCAAGCATGTGATT
ACCCCAGAAGCCCACGTGACGTTGGCGAAACAGCTGGCTGGAGACATTGCCTTGGAGCTGCAGGCCTACT
TGAGGAGCAAGTTCCCAGAACTGCCCTTTGGTGCACTCGTGCCGGGTGGGCCTCTCTACGACGGGCTCCA
GGCAGGGACTGCTGAGCACGTGCGCCTGCTGGCGCCTCTGGAGTTGGAGCCGGGGCTATGGAGCCTGGTA
CCTGGCGTGGACACTGTGGCCAGGGAGCCTCGATGCTGGGCTGTACGCAGGACTCAGCTTGAGTTTCATC
CCCGTGGGTGCAGCCCATGGGACCGCTTCCTGGTGGGGGGCTACCTCTCCTCCCGAGTCTTGCTGGAGCT
GCTACGGAAGGCCCTGTCAGCCTCTGTCAACTGGCCAGCCATTGGCAGCCTGCTCGGGTGTCTGATCTGG
CCCGATGTGGCTTCGGAGGAGCTGCTGCTCAAAGTGCAACACGAGTGCCTGGAGTTCACTTTAGCTGTGC
TCATGGTAGTCCCTGGGGCCAGCACTGATGACCGCCTGCTGCTGGCTTGGCCCCTAGAGGGGCTGGCCAG
CAATCTCTGGCTGCAGGATCTATATCCAGTAGAGACCGCCCGTTTGCGGGCCCTGGATGACCAGGATGCT
GGTACTCGGCGGAGGTTGTTGCTGCTGCTGTGTGGTATCTGTCGTGGCCATCCGGCTCTAGTGCGGCTGG
GCTGGAGCCACCTGACTCAGGTGGTTCTGCATCTGGGTGAAGAGGAAGTGGCCTGGACTGAGGAGGCCTT
GGGGGAACGGTTTCTGCAAGCCCTGGAGTTTCTGGTGGGCAGCTTGGAGCAGGCTAGCCTGCCCTGTCAC
TTCAACCCCAGTGTGAACCTCTTGGGTAACTTCCGGGAAGAGGAGATTGATGACATTGGCTACGTGCTGT
ACAGCGGCCTCCAGGTTCCTGAAAGCCTATTCTAG

Translation (454 aa):
MAEFSQKQRKQSGSEGLGSVVDFLLANARLVLGVGGAAVLGIATLAVKRLIDRATSPPDEDDTKGDSWKE
LSLLRATSPQKPQPPPAAFSQPLATGSPSPSVPVEPTPIHSPTTPKFSTIAPLCLTFQERLLAFERKHVI
TPEAHVTLAKQLAGDIALELQAYLRSKFPELPFGALVPGGPLYDGLQAGTAEHVRLLAPLELEPGLWSLV
PGVDTVAREPRCWAVRRTQLEFHPRGCSPWDRFLVGGYLSSRVLLELLRKALSASVNWPAIGSLLGCLIW
PDVASEELLLKVQHECLEFTLAVLMVVPGASTDDRLLLAWPLEGLASNLWLQDLYPVETARLRALDDQDA
GTRRRLLLLLCGICRGHPALVRLGWSHLTQVVLHLGEEEVAWTEEALGERFLQALEFLVGSLEQASLPCH
FNPSVNLLGNFREEEIDDIGYVLYSGLQVPESLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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