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Report for CCDS25811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25811.1 Public Mus musculus 12 Rdh14 23 108 98 CCDS HistoryNCBI Gene:105014Re-query CCDS DB by CCDS ID:25811.1Re-query CCDS DB by GeneID:105014See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020947.6 ENSMUSP00000020947.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020947.6Link to Ensembl Protein Viewer:ENSMUSP00000020947.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020947Re-query CCDS DB by Protein ID:ENSMUSP00000020947
Original member Current member NCBI NM_023697.2 NP_076186.1 Accepted alive Link to Nucleotide Sequence:NM_023697.2Link to Protein Sequence:NP_076186.1Re-query CCDS DB by Nucleotide ID:NM_023697Re-query CCDS DB by Protein ID:NP_076186Link to BLAST:NP_076186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076186.1 334 Q9ERI6 334 100% 0 0

Chromosomal Locations for CCDS 25811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10390840 10391226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10394538 10395155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCAGTGGCTAGTGTGGCCGCAGCGCTCCTGGCCGCACTGGGCGGGGCGCTGTGGCTGGCGGCCCGGC
GGTTCTCTGGGCCAAGAAACCAGCGGCAGCAGGGAGGCGGGGACCCGGGCCTCATGCACGGGAAGACAGT
GCTGATCACCGGAGCAAACAGCGGCCTGGGCCGTGCCACCGCGGCGGAGCTGCTCCGCCTGGGGGCGCGG
GTCATCATGGGATGTCGGGACCGCGCTCGAGCAGAGGAGGCGGCCGGTCAGCTCAGGCAGGAGCTCTGTC
AGGCTGGGGGCGCCGGGCCCGACGGCACCGATGGCCAGCTGGTCGTTAAGGAGCTGGACCTTGCCTCGCT
GCGCTCAGTGCGAGCTTTCTGCCAAGAACTGCTACAGGAGGAGCCCAGGCTAGACGTCCTGATCAATAAT
GCGGGGGTTTTCCACTGCCCGTATACGAAGACTGAAGATGGGTTTGAGATGCAGTTTGGAGTGAACCATC
TGGGCCACTTCCTACTCACCAATCTTCTCCTTGGACTCCTCAAAAGTTCAGCTCCCAGCAGGATTGTAGT
CGTTTCTTCCAAACTTTATAAATATGGAGAAATCAACTTTGAAGACTTGAACAGTGAGCAAAGCTATAAT
AAAAGCTTCTGTTATAGTCGAAGCAAACTGGCTAACATTCTTTTCACAAGAGAATTAGCCCGTCGCTTAG
AAGGAACAAACGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCGAACAAACCTAGGGAGGCATATTCA
CATCCCACTGCTGGCAAGACCACTTTTCAATTTGGTATCCTGGGCTTTTTTCAAAACTCCATTAGAAGGT
GCCCAGACTTCCATCTATTTAGCCTGTTCACCTGACGTAGAAGGTGTGTCAGGAAGGTACTTTGGAGATT
GTAAGGAGGAAGAGCTCTTGCCCAAAGCTATGGATGAGTCAGTGGCAAGAAAACTGTGGGATATCAGTGA
AGTGATGGTTGGCATTCTAAAATAG

Translation (334 aa):
MAVASVAAALLAALGGALWLAARRFSGPRNQRQQGGGDPGLMHGKTVLITGANSGLGRATAAELLRLGAR
VIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINN
AGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGEINFEDLNSEQSYN
KSFCYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEG
AQTSIYLACSPDVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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