NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48423.1 Public Mus musculus 1 Blzf1 23 108 98 CCDS HistoryNCBI Gene:66352Re-query CCDS DB by CCDS ID:48423.1Re-query CCDS DB by GeneID:66352See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086032.3 ENSMUSP00000083196.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086032.3Link to Ensembl Protein Viewer:ENSMUSP00000083196.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086032Re-query CCDS DB by Protein ID:ENSMUSP00000083196
Original member Current member EBI ENSMUST00000120447.7 ENSMUSP00000113479.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120447.7Link to Ensembl Protein Viewer:ENSMUSP00000113479.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120447Re-query CCDS DB by Protein ID:ENSMUSP00000113479
Original member Current member NCBI NM_001160208.1 NP_001153680.1 Accepted alive Link to Nucleotide Sequence:NM_001160208.1Link to Protein Sequence:NP_001153680.1Re-query CCDS DB by Nucleotide ID:NM_001160208Re-query CCDS DB by Protein ID:NP_001153680Link to BLAST:NP_001153680.1
Original member Current member NCBI NM_001160209.1 NP_001153681.1 Accepted alive Link to Nucleotide Sequence:NM_001160209.1Link to Protein Sequence:NP_001153681.1Re-query CCDS DB by Nucleotide ID:NM_001160209Re-query CCDS DB by Protein ID:NP_001153681Link to BLAST:NP_001153681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153680.1 403 Q8R2X8-1 403 100% 0 0
NP_001153681.1 403 Q8R2X8-1 403 100% 0 0

Chromosomal Locations for CCDS 48423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164292226 164292411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164295710 164295929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164298239 164298367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164299545 164299744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164302284 164302720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164306439 164306478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGAAAAAATGACTACCCTTAAAAGTTCGGAAAACAAAGGCATCCTTACTTCGACCCCAATCCGAGGAG
CAGGAGATGGAATGGAAACGGAGGAGCCCCCTAAGTCTGTTGAAGTCACCCACGGAGTCCAACCCATAAA
TCAACATGTCCTTCCAAGTCCACGGAAGAAAGTGTCCTCAGACAGCCCGGGCGTTCTTCAGCTGGGGAAG
ATTCTTAATGAAAGAACAGTGGAAGTTGAAGCTGTCAGAATATTTGTTCCCAAAGCTGCTATCACTCACG
ACATCCCCACCAAGAACACAAAGGTTAAGTCCCTAGGACATCACAGAGAAGAACTCCACAATCAGGCAGA
AGTGGTCACAGACCCAAGGAAGGAACTCTCAGAGGTAAAGAAGGTTTTGGAAAAGCTCAAGAATTCTGAA
AGGAGGCTACTTCAGGACAAAGAAGGCCTTTCCAATCAGCTCCGAGTACAGACAGAGATAAATCGTGAGT
TAAAGAAGTTACTCGTGGCTTCTGTTGGGGATGACCCGCAGTATCACTTTGAACGTCTAGCCCGGGAGAA
GAACCAGCTCATCTTAGAAAATGAAGCACTAGGTCGGAACACAGCCCAGCTTTCTGAACAGCTGGAACGG
ATGTCAATACAGTGCGATGTCTGGAGAAGTAAATTCCTTGCAAGCAGGGTAATGGCAGATGAGTTAACAA
ACTTCAGAGTGGTTTTACAGCGTCAGAACCGAGATGCCCAGAGCGCTATCCAGGATCTCCTGAGTGAACG
AGAGCAGTTTCGTCAGGAAATGACCTCTACCCAAAAATTTTTGGAAGAACTCTTGGTCTCCTTACAGTGG
GGGAGAGAGCAGACATACTCCCCTAACACACAGCCCCATAGCACGGCAGACTTAGCACTCACGAACCATG
GACTGGCACAAGCAATACATGCCCATCTGTTGGGGAATGTTGGCATTAGCCATCAAAAGAAGATTCCAAC
AACAGTCGAATTCTGCAGTACCCCAGCTGAGAAAATGGCTGAAAAGGTTCTGCGGATTTTGGATCCAGTT
GCCTGTACAGAGAGCTCTCCGGACAACCAATTTGCTGAATCTTCACCAACCACATTACTCACTACAAAGA
AAAATATTGGACGTTTCCATCCCTATACCAGATATGAAAATATAACTTTCAATTGCTGCAATCACTGCCA
GGGGGAGCTCATTGCTCTTTAG

Translation (403 aa):
MEKMTTLKSSENKGILTSTPIRGAGDGMETEEPPKSVEVTHGVQPINQHVLPSPRKKVSSDSPGVLQLGK
ILNERTVEVEAVRIFVPKAAITHDIPTKNTKVKSLGHHREELHNQAEVVTDPRKELSEVKKVLEKLKNSE
RRLLQDKEGLSNQLRVQTEINRELKKLLVASVGDDPQYHFERLAREKNQLILENEALGRNTAQLSEQLER
MSIQCDVWRSKFLASRVMADELTNFRVVLQRQNRDAQSAIQDLLSEREQFRQEMTSTQKFLEELLVSLQW
GREQTYSPNTQPHSTADLALTNHGLAQAIHAHLLGNVGISHQKKIPTTVEFCSTPAEKMAEKVLRILDPV
ACTESSPDNQFAESSPTTLLTTKKNIGRFHPYTRYENITFNCCNHCQGELIAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH