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Report for CCDS53015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53015.1 Public Mus musculus X Usp11 23 108 98 CCDS HistoryNCBI Gene:236733Re-query CCDS DB by CCDS ID:53015.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033383.2 ENSMUSP00000033383.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033383.2Link to Ensembl Protein Viewer:ENSMUSP00000033383.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033383Re-query CCDS DB by Protein ID:ENSMUSP00000033383
Original member Current member NCBI NM_145628.4 NP_663603.3 Accepted alive Link to Nucleotide Sequence:NM_145628.4Link to Protein Sequence:NP_663603.3Re-query CCDS DB by Nucleotide ID:NM_145628Re-query CCDS DB by Protein ID:NP_663603Link to BLAST:NP_663603.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663603.3 921 Q99K46 921 100% 0 0

Chromosomal Locations for CCDS 53015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20703968 20704119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20711749 20711858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20712030 20712160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20712326 20712443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20712837 20712982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20713115 20713176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20713297 20713396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20713748 20713921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20714014 20714172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20714507 20714731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20714853 20714936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20715028 20715122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20716747 20716953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20717755 20717804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20717994 20718272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20718354 20718424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20718679 20718791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20719065 20719214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20719299 20719414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20719593 20719681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20719766 20719900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGGCGGCGGTCGCAGCGGACCCAGCTGCAGCTGCCGTCCCGGCCTCTGCTGAGGACCGAGACACACAGC
CCGAGGCAATGCCAGACCTGGATGAACAGTGGCGCCAAATCGGGAATGGGCGAGAGCGTCCACTGCGAGC
TGGCGAAAGCTGGTTCCTTGTGGAGAAACACTGGTATAAACAGTGGGAGGTGTACGTGAAGGGAGGGGAT
CAAGATGCTAGCACCTTTCCTGGCTGTATCAACAATGCTGGGCTCTTTGAAGATCAGATAAGCTGGCATC
TCAGGGAGAGACTGCTAGAAGGAGATGATTATGTGCTGCTCCCAGCGCCTGCTTGGAACTACATGGTCAG
CTGGTATGGCTTAATGGATGGCCAGCCACCTATTGAGCGCAAGGTAATAGAACTTCCTGGCATTCGGAAG
GTGGAAGTGTACCCACTAGAGCTACTGCTCGTTCAGCACAGTGATATGGAAACAGCTCTCACCATTCAGT
TTAGCTATACTGATTCTGTGGAACTAGTCTTGCAAACAGCTCGGGAGCAGTTTCTGGTAGAGCCTCAGGA
AGACACGCGCCTCTGGACCAAGAACTCAGAGGGCTCTTTGGATCGACTGTGTAATACACAGATCACGCTG
CTTGATGCCTGCCTTGAGACTGGGCAGTTGGTCATCATGGAGACTCGAAACAAAGATGGCACTTGGCCCA
GTGCTCAGCTGTGTGGCATGAACAACATACCGGACGAGGATGAGGACTTCCAGGGGCAACCGGGCATCTG
TGGCCTTACCAATCTGGGCAACACATGCTTCATGAACTCGGCCCTACAGTGCCTGAGCAATGTGCCACAG
CTGACAGAGTACTTTCTCAACAATCGCTACCTAGAGGAGCTCAACTTCCGGAACCCTCTAGGCATGAAGG
GTGAGCTTGCTGAGGCCTATGCAGATCTGGTAAAGCAGACTTGGTCTGGCTACCACCGCTCCATTGTGCC
AAATGTGTTCAAGAACAAGGTTGGCCATTTTGCATCCCAGTTTCTGGGCTACCAGCAGCATGACTCACAG
GAACTACTGTCATTCCTCCTGGATGGGCTACATGAGGATCTCAATCGGGTCAAAAAGAAAGAATATGTTG
AGCTATGCAATGGTGCTGGGCGGCCTGATCTGGAAGTGGCTCAGGAAGCCTGGCAGAACCATAAACGACG
AAATGATTCTGTGATCGTGGACACTTTCCATGGCCTCTTCAAGTCCACCCTGGTGTGCCCTGATTGTGGC
AATGTTTCTGTGACCTTTGACCCCTTCTGCTACCTCAGTGTCCCACTGCCTGTCTGCTCCAGGAGGGTCT
TGGAAGTCTTCTTTGTCCCCATGGATCCCCGCCGCAAGCCAGAACAGCACCGGGTTGTAGTCCCCAAGAA
GGGCAATATCTCAGATCTGTGTGTGGCTCTGTCCACGCATACAAGTGTTGCACCAGACAAGATGATAGTA
GCTGATGTCTTCAGTCACCGATTCTATAAGCTTTACCAGCTGGAGGATCCTCTGAGTGGCATCTTGGATC
GTGATGATATCTTTGTATATGAGGTGACTGGTCGGATTGAGCCGGTTGAGGGTTCAAGAGATGATATTGT
GGTACCTGTTTACTTGCGGGAGCGCACCCCATCCAGAGACTACAACAACTCCTACTATGGTCTGATACTT
TTTGGGCACCCTCTCCTGGTGTCAGTGCCCCGGGACCGGTTCTCCTGGGAGGGCCTATATAACATCTTGA
TGTACCGACTTTCACGATATGTGACCAAACCCACCTCAGATGAGGATGATGGGGATGAGAAAGTTGATGA
AGATGAGGATGAGGATGTGGAAGATGACAGCAGCAGTGAGGAGGAAAAGGAGGAAATGTCTGCGCCCACT
GTTAATGATGGGACCCGAGAAGCAGAGCAGGAGCAGGCTGGGACCAGCTCTGGGGTCACTGAGAGATGCC
CATCCCTCTTAGACAACAGCCTCCGCGCATCGCAGTGGCCCCCAAGGCGACGACGAAAGCAGCTGTTTAC
TCTGCAGACGGTGAACTCCAATGGAACCAGTGACCGGACCACTTCCCCTGAAGAAATGCAAACCCAGCCA
TACATTGCCATGGATTGGGAACCAGATATGAAGAGGCGTTATTATGACGAAGTGGAGGCTGAGGGCTATG
TGAAGCATGACTGTGTGGGCTACATGCTGAAGAAAAGTCCAGTGCAGCTGAAGGAGTGCATCAAACTCTT
CACCACTGTGGAAACCCTGGAGAAGGAGAACCCCTGGTACTGCTCCTCCTGCAAGCAGCACCAGCTGGCC
ACCAAGAAACTGGACCTCTGGATGCTACCCGAAGTTCTCATTATCCACCTGAAGCGTTTTTCATTTTCCA
AAATTTCCCGGGAGAAGCTGGACACCCTGGTGCAGTTTCCTATCCGGGACCTGGATTTCTCTGAGTTTGT
CATCAAACCAAAGAATGAGTCTTCTCCAGACCTCTACAAATATGATCTCATCGCAGTTTCCAACCATTAT
GGTGGCATGCGTGATGGACACTATACAACATTTGCCTGCAACAAGGACAGTGGCCAGTGGCACTACTTTG
ATGACAATAGTGTCTCACCTGTGAATGAGAATCAGATTGAGTCCAAGGCAGCCTATGTCTTGTTCTATCA
GCGCCAAGATGTGGGTCGACGCCAGTCCCAGACTTCTTCATCTGACACTCCTGCCTCTCCTGTCTCCAGT
TCTACACCCAACTCTGACATCATGGATATCAACTAA

Translation (921 aa):
MAAVAADPAAAAVPASAEDRDTQPEAMPDLDEQWRQIGNGRERPLRAGESWFLVEKHWYKQWEVYVKGGD
QDASTFPGCINNAGLFEDQISWHLRERLLEGDDYVLLPAPAWNYMVSWYGLMDGQPPIERKVIELPGIRK
VEVYPLELLLVQHSDMETALTIQFSYTDSVELVLQTAREQFLVEPQEDTRLWTKNSEGSLDRLCNTQITL
LDACLETGQLVIMETRNKDGTWPSAQLCGMNNIPDEDEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQ
LTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQ
ELLSFLLDGLHEDLNRVKKKEYVELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCG
NVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAPDKMIV
ADVFSHRFYKLYQLEDPLSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRDYNNSYYGLIL
FGHPLLVSVPRDRFSWEGLYNILMYRLSRYVTKPTSDEDDGDEKVDEDEDEDVEDDSSSEEEKEEMSAPT
VNDGTREAEQEQAGTSSGVTERCPSLLDNSLRASQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEMQTQP
YIAMDWEPDMKRRYYDEVEAEGYVKHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLA
TKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHY
GGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQDVGRRQSQTSSSDTPASPVSS
STPNSDIMDIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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