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Report for CCDS45879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45879.1 Public Homo sapiens 18 PIGN 24 110 108 CCDS HistoryNCBI Gene:23556Re-query CCDS DB by CCDS ID:45879.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357637.10 ENSP00000350263.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357637.10Link to Ensembl Protein Viewer:ENSP00000350263.4Re-query CCDS DB by Nucleotide ID:ENST00000357637Re-query CCDS DB by Protein ID:ENSP00000350263
Original member Current member EBI ENST00000400334.7 ENSP00000383188.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400334.7Link to Ensembl Protein Viewer:ENSP00000383188.2Re-query CCDS DB by Nucleotide ID:ENST00000400334Re-query CCDS DB by Protein ID:ENSP00000383188
Original member Current member EBI ENST00000640145.1 ENSP00000491525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640145.1Link to Ensembl Protein Viewer:ENSP00000491525.1Re-query CCDS DB by Nucleotide ID:ENST00000640145Re-query CCDS DB by Protein ID:ENSP00000491525
Original member Current member EBI ENST00000640876.1 ENSP00000491628.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640876.1Link to Ensembl Protein Viewer:ENSP00000491628.1Re-query CCDS DB by Nucleotide ID:ENST00000640876Re-query CCDS DB by Protein ID:ENSP00000491628
Original member Current member EBI ENST00000640050.1 ENSP00000492051.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640050.1Link to Ensembl Protein Viewer:ENSP00000492051.1Re-query CCDS DB by Nucleotide ID:ENST00000640050Re-query CCDS DB by Protein ID:ENSP00000492051
Original member Current member EBI ENST00000640252.2 ENSP00000492233.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000640252.2Link to Ensembl Protein Viewer:ENSP00000492233.1Re-query CCDS DB by Nucleotide ID:ENST00000640252Re-query CCDS DB by Protein ID:ENSP00000492233
Original member Current member EBI ENST00000638936.1 ENSP00000492592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638936.1Link to Ensembl Protein Viewer:ENSP00000492592.1Re-query CCDS DB by Nucleotide ID:ENST00000638936Re-query CCDS DB by Protein ID:ENSP00000492592
Original member Current member NCBI NM_012327.6 NP_036459.1 Accepted alive Link to Nucleotide Sequence:NM_012327.6Link to Protein Sequence:NP_036459.1Re-query CCDS DB by Nucleotide ID:NM_012327Re-query CCDS DB by Protein ID:NP_036459Link to BLAST:NP_036459.1
Original member Current member NCBI NM_176787.5 NP_789744.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176787.5Link to Protein Sequence:NP_789744.1Re-query CCDS DB by Nucleotide ID:NM_176787Re-query CCDS DB by Protein ID:NP_789744Link to BLAST:NP_789744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036459.1 931 O95427 931 100% 0 0
NP_789744.1 931 O95427 931 100% 0 0

Chromosomal Locations for CCDS 45879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 62045856 62045979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62072673 62072725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62074779 62074821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62082673 62082746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62084531 62084606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62085209 62085264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62088756 62088842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62090476 62090578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62095848 62095950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62101075 62101183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62102794 62102902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62105543 62105634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62106789 62106881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62106986 62107085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62109834 62109973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62113134 62113316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62114561 62114639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62138243 62138298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62138983 62139075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62140420 62140479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62143306 62143346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62145909 62146025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62146971 62147101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62148214 62148338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62154545 62154651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62157129 62157227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62157687 62157808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62161133 62161353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGCTGCTGTTCTTTACTTTGGGATTGCTTATACATTTTGTGTTCTTCGCCTCCATCTTTGACATTTATT
TTACATCTCCTTTGGTTCATGGAATGACTCCTCAGTTTACACCATTGCCTCCTCCAGCGAGAAGATTAGT
GTTGTTTGTTGCTGATGGCCTTCGAGCAGATGCACTTTACGAATTAGATGAAAATGGAAACTCTAGAGCA
CCGTTTATTAGGAATATCATAATGCATGAAGGCAGCTGGGGCATATCTCATACACGTGTGCCAACAGAAT
CTCGGCCAGGTCATGTAGCTCTGATAGCTGGGTTTTATGAAGATGTCAGTGCAGTTGCCAAAGGATGGAA
GGAAAATCCTGTAGAGTTTGATTCTCTTTTTAATGAAAGTAAATACACATGGAGCTGGGGAAGCCCAGAT
ATCCTGCCTATGTTTGCCAAAGGTGCTAGTGGAGACCACGTTTATACATATAGTTATGATGCTAAAAGAG
AGGATTTTGGTGCTCAAGATGCAACAAAACTGGATACGTGGGTTTTTGATAATGTTAAGGACTTCTTTCA
TCATGCCAGAAACAACCAGTCTTTGTTTTCTAAAATAAATGAAGAGAAAATAGTTTTTTTCTTACATTTA
TTAGGAATAGATACAAACGGACATGCTCATCGACCATCCTCGAGAGACTACAAGCACAATATTAAAAAAG
TTGATGATGGAGTTAAAGAAATCGTGTCTATGTTTAACCACTTCTATGGAAATGATGGGAAAACAACATT
TATCTTTACCTCTGACCATGGAATGACAGACTGGGGTTCCCATGGGGCTGGTCATCCTTCAGAGACTTTA
ACTCCTTTAGTCACTTGGGGAGCTGGAATCAAGTATCCCCAAAGAGTATCAGCTCAGCAATTTGATGATG
CATTTTTGAAAGAGTGGAGATTGGAGAATTGGAAGAGGCTAGATGTCAATCAGGCTGATATTGCACCATT
GATGACTTCCCTTATTGGAGTTCCCTTTCCTCTTAACTCAGTGGGAATCCTTCCTGTGGATTATCTTAAC
AACACTGATCTCTTCAAAGCAGAGAGCATGTTTACAAATGCAGTACAGATTCTTGAACAGTTCAAGGTGA
AAATGACTCAGAAGAAAGAAGTTACTTTACCATTTTTGTTTACACCATTTAAACTGCTTTCTGATTCCAA
ACAGTTCAACATTTTAAGAAAAGCAAGATCTTATATAAAACACAGAAAGTTTGATGAAGTGGTCTCCCTT
TGCAAGGAGCTAATTCATCTTGCATTGAAAGGATTGTCCTATTATCACACATATGACAGATTCTTTTTGG
GCGTCAATGTTGTTATTGGTTTTGTGGGATGGATATCTTATGCCTCTTTGTTGATCATCAAGTCTCATTC
CAACCTTATAAAAGGTGTTAGTAAAGAAGTGAAGAAACCAAGCCATCTCCTGCCTTGTAGTTTTGTAGCT
ATTGGCATTTTAGTAGCATTTTTTCTGCTGATTCAAGCCTGTCCCTGGACATATTATGTATATGGTTTGT
TGCCACTGCCAATATGGTATGCGGTTCTAAGAGAATTTCAAGTTATTCAGGACCTTGTTGTATCAGTGTT
GACCTATCCTCTGAGCCATTTTGTTGGGTACCTGTTAGCCTTTACCCTGGGAATTGAAGTATTAGTTCTC
AGTTTTTTCTACCGCTATATGCTTACCGCTGGACTTACTGCCTTTGCAGCTTGGCCATTTCTCACTCGGC
TGTGGACTCGAGCAAAGATGACCTCACTGAGTTGGACTTTCTTCTCTTTGCTCCTGGCAGTGTTCCCACT
GATGCCGGTTGTAGGTCGAAAGCCAGACATCTCTCTAGTGATGGGTGCAGGCTTGCTGGTTCTTCTGTTA
TCCCTGTGTGTTGTAACATCTCTCATGAAAAGAAAAGATAGCTTTATAAAGGAAGAGCTATTGGTACATC
TGTTACAGGTGCTGAGCACAGTGCTCTCCATGTATGTTGTGTATAGCACTCAGAGTAGTCTACTCAGGAA
GCAAGGACTGCCTCTCATGAATCAAATTATTAGCTGGGCAACATTAGCCTCTTCCTTGGTTGTGCCACTA
CTGAGTTCTCCAGTTCTCTTTCAGCGATTGTTCAGCATACTTCTTTCATTGATGTCAACCTACCTACTTC
TAAGCACAGGGTATGAAGCTCTCTTTCCACTAGTGTTGTCTTGTTTGATGTTTGTCTGGATAAACATAGA
ACAAGAAACTCTACAACAATCTGGTGTTTGCTGTAAACAAAAGCTCACCAGTATCCAGTTCTCTTATAAT
ACTGATATAACTCAGTTTCGACAGCTATATCTGGATGACATCCGTAGGGCCTTTTTCCTTGTTTTCTTCT
TAGTGACAGCATTTTTTGGAACTGGAAATATAGCTTCTATTAACAGCTTTGATCTTGCCTCTGTCTATTG
CTTTCTGACTGTGTTCAGTCCTTTTATGATGGGAGCCCTGATGATGTGGAAGATTTTAATCCCCTTTGTT
CTTGTTATGTGTGCTTTTGAAGCAGTTCAGTTGACTACTCAGTTATCGTCAAAAAGCCTTTTTCTCATTG
TTCTCGTCATATCAGACATTATGGCTTTGCATTTTTTCTTCTTGGTCAAGGATTATGGCAGCTGGCTTGA
TATTGGGACAAGCATCAGCCACTATGTGATTGTCATGTCCATGACCATCTTTTTGGTGTTCCTCAATGGC
CTGGCCCAGCTGCTCACAACGAAGAAACTCAGACTATGTGGCAAACCCAAAAGTCACTTCATGTGA

Translation (931 aa):
MLLFFTLGLLIHFVFFASIFDIYFTSPLVHGMTPQFTPLPPPARRLVLFVADGLRADALYELDENGNSRA
PFIRNIIMHEGSWGISHTRVPTESRPGHVALIAGFYEDVSAVAKGWKENPVEFDSLFNESKYTWSWGSPD
ILPMFAKGASGDHVYTYSYDAKREDFGAQDATKLDTWVFDNVKDFFHHARNNQSLFSKINEEKIVFFLHL
LGIDTNGHAHRPSSRDYKHNIKKVDDGVKEIVSMFNHFYGNDGKTTFIFTSDHGMTDWGSHGAGHPSETL
TPLVTWGAGIKYPQRVSAQQFDDAFLKEWRLENWKRLDVNQADIAPLMTSLIGVPFPLNSVGILPVDYLN
NTDLFKAESMFTNAVQILEQFKVKMTQKKEVTLPFLFTPFKLLSDSKQFNILRKARSYIKHRKFDEVVSL
CKELIHLALKGLSYYHTYDRFFLGVNVVIGFVGWISYASLLIIKSHSNLIKGVSKEVKKPSHLLPCSFVA
IGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLVVSVLTYPLSHFVGYLLAFTLGIEVLVL
SFFYRYMLTAGLTAFAAWPFLTRLWTRAKMTSLSWTFFSLLLAVFPLMPVVGRKPDISLVMGAGLLVLLL
SLCVVTSLMKRKDSFIKEELLVHLLQVLSTVLSMYVVYSTQSSLLRKQGLPLMNQIISWATLASSLVVPL
LSSPVLFQRLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFVWINIEQETLQQSGVCCKQKLTSIQFSYN
TDITQFRQLYLDDIRRAFFLVFFLVTAFFGTGNIASINSFDLASVYCFLTVFSPFMMGALMMWKILIPFV
LVMCAFEAVQLTTQLSSKSLFLIVLVISDIMALHFFFLVKDYGSWLDIGTSISHYVIVMSMTIFLVFLNG
LAQLLTTKKLRLCGKPKSHFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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