NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31374.1 Public Homo sapiens 11 OR52A1 24 110 108 CCDS HistoryNCBI Gene:23538Re-query CCDS DB by CCDS ID:31374.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380367.3 ENSP00000369725.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380367.3Link to Ensembl Protein Viewer:ENSP00000369725.1Re-query CCDS DB by Nucleotide ID:ENST00000380367Re-query CCDS DB by Protein ID:ENSP00000369725
Original member Current member NCBI NM_012375.3 NP_036507.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012375.3Link to Protein Sequence:NP_036507.2Re-query CCDS DB by Nucleotide ID:NM_012375Re-query CCDS DB by Protein ID:NP_036507Link to BLAST:NP_036507.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036507.2 312 Q9UKL2 312 100% 0 0

Chromosomal Locations for CCDS 31374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5151431 5152369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGTCCATTTCCAACATCACAGTCTACATGCCCTCTGTGTTGACACTAGTAGGGATCCCAGGCCTAGAAT
CTGTGCAGTGCTGGATTGGGATTCCATTCTGTGCCATTTATCTCATTGCTATGATTGGAAATTCCTTGCT
TCTGAGCATCATCAAATCTGAGCGCAGTCTCCATGAGCCCTTGTACATTTTCTTAGGCATGCTAGGAGCC
ACAGACATTGCACTTGCTAGCAGCATTATGCCAAAGATGCTTGGAATATTCTGGTTTAATGTGCCTGAAA
TCTATTTTGATTCCTGCTTGCTTCAAATGTGGTTCATCCACACATTGCAGGGTATAGAGTCAGGCATCCT
TGTGGCCATGGCCCTGGACCGTTATGTGGCCATCTGTTATCCACTAAGACATGCCAACATCTTCACCCAC
CAGCTTGTCATTCAGATAGGAACTATGGTCGTACTCAGGGCTGCTATTCTTGTAGCCCCATGCCTAGTAC
TGATAAAGTGCCGGTTTCAATTTTATCACACAACAGTCATCTCCCACTCCTACTGTGAGCATATGGCCAT
TGTGAAACTAGCAGCAGCAAATGTTCAAGTCAACAAAATCTATGGTTTGTTTGTGGCCTTCACTGTAGCA
GGATTTGACCTCACATTCATCACATTGTCCTACATCCAGATATTTATCACAGTTTTTCGTTTGCCCCAGA
AGGAGGCTAGGTTTAAAGCATTCAATACCTGCATTGCTCACATCTGTGTCTTCCTCCAGTTCTACCTCCT
TGCCTTCTTCTCCTTCTTCACACATAGGTTTGGGTCTCACATCTCCCCTTATATCCATATTCTCTTTTCT
AGCATTTACTTGCTGGTCCCTCCATTTCTCAATCCACTTGTCTATGGTGCAAAGACCACACAGATTCGCA
TTCATGTGGTAAAAATGTTCTGTTCATAA

Translation (312 aa):
MSISNITVYMPSVLTLVGIPGLESVQCWIGIPFCAIYLIAMIGNSLLLSIIKSERSLHEPLYIFLGMLGA
TDIALASSIMPKMLGIFWFNVPEIYFDSCLLQMWFIHTLQGIESGILVAMALDRYVAICYPLRHANIFTH
QLVIQIGTMVVLRAAILVAPCLVLIKCRFQFYHTTVISHSYCEHMAIVKLAAANVQVNKIYGLFVAFTVA
GFDLTFITLSYIQIFITVFRLPQKEARFKAFNTCIAHICVFLQFYLLAFFSFFTHRFGSHISPYIHILFS
SIYLLVPPFLNPLVYGAKTTQIRIHVVKMFCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH