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Report for CCDS40508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40508.1 Public Mus musculus 8 Spg7 23 108 98 CCDS HistoryNCBI Gene:234847Re-query CCDS DB by CCDS ID:40508.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149248.8 ENSMUSP00000119552.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149248.8Link to Ensembl Protein Viewer:ENSMUSP00000119552.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000149248Re-query CCDS DB by Protein ID:ENSMUSP00000119552
Original member Current member NCBI NM_153176.5 NP_694816.3 Accepted alive Link to Nucleotide Sequence:NM_153176.5Link to Protein Sequence:NP_694816.3Re-query CCDS DB by Nucleotide ID:NM_153176Re-query CCDS DB by Protein ID:NP_694816Link to BLAST:NP_694816.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694816.3 781 Q3ULF4 781 100% 0 0

Chromosomal Locations for CCDS 40508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123065527 123065709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123066473 123066575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123070376 123070465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123073749 123073990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123076851 123076990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123077818 123077920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123079414 123079539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123079969 123080131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123080637 123080810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123087328 123087452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123088945 123089047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123090124 123090234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123091635 123091750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123093591 123093747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123094474 123094640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123095158 123095235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123097394 123097558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2346 nt):
ATGGCGGCCGCCTTGCTGCTGCTTCGCGGGCTCCGCCCCGGCCCGGAGCCCCGGCCCCGACGGCTGTGGG
GCCTGCTCTCAGGCAGGGGCCCAGGCCTCTCGTCCGGGGCTGGGGCCAGGCGGCCGTACGCGGCCCGCGG
GACTCCGGTTGGCCCGGCTGCGGCTGGAGGCCACGCGCCTCAGAGTTTGCTATTGCGAATACTGACCCCT
AGCTTTGAAGGTATTAGCGGATTGTTACTGAAACAGCATATAGTTCCAAATGCAGTCAGACTGTGGCCGC
TTTCAGGTAGCACTTTGTATTTTAACACCTCAAGGATGAAGCAGAAGAATAAAGACAATGATAAACCCAA
AGGCAAGACCCCTGAAGATGATGAAGAAGAGAAGAGACGAAAAGAGCGGGAAGACCAGATGTACCGAGAG
AGGCTGCGCACCCTGTTCATCATTGCTCTTGTCATGAGCCTGCTGAACTCCCTCAGTACAAGTGGGGGCA
GTATTTCCTGGGCTGACTTTGTCAACGAGATGCTGGCTAAAGGCGAGGTGCAGCGTGTGCAGGTGGTGCC
CGAGAGTGATGTGGTGGAAGTCTATCTGCATCCTGGAGCTGTGGTGTTTGGGCGGCCTCGGCTGGCCCTG
ATGTATCGGATGCAGGTTGCAAACATCGACAAATTTGAAGAGAAGCTTCGAGCAGCCGAAGATGAACTGA
ACATTGAGAGCAAGGACAGGATTCCCGTGTCCTACAAGCGGACAGGATTCTTTGGGAATGCCCTCTACGC
CCTGGGGATGACAGCCGTGGGCTTGGCCATCCTGTGGTATGTTTTCAGACTGGCGGGGATGACCGGAAGG
GAAGGCGGATTCAGTGCTTTTAATCAGCTTAAGATGGCACGTTTCACCATTGTGGACGGGAAGACAGGGA
AAGGAGTCAGCTTCCAAGATGTGGCAGGAATGCATGAAGCCAAGCTGGAAGTCCGAGAATTTGTGGATTA
TCTGAAGAGCCCAGAGCGTTTCCTTCAGCTCGGTGCCAAGGTTCCAAAGGGTGCCCTGTTGCTGGGGCCC
CCTGGCTGTGGGAAGACGCTGTTGGCCAAGGCAGTAGCCACGGAGGCTCAGGTGCCCTTTTTAGCAATGG
CTGGCCCAGAGTTTGTGGAGGTGATTGGAGGCCTGGGAGCTGCCCGAGTGCGAAGCCTCTTCAAGGAGGC
ACGAGCCAGGGCCCCTTGCATAGTGTACATTGATGAGATCGATGCTGTGGGAAAGAAGCGCTCCACCTCC
ATGTCTGGGTTCTCCAACACGGAAGAGGAGCAGACCCTCAACCAGCTCCTGGTGGAGATGGACGGAATGG
GCACCACAGACCATGTCATCGTCTTGGCATCCACCAATCGAGCTGATGTTCTGGACAATGCTCTGATGAG
GCCTGGGCGGCTCGACAGGCATGTCTTCATTGATCTTCCCACGCTCCAGGAGAGGCGGGAGATTTTCGAG
CAGCACCTGAAAGGCCTGAAGTTGACCCAGCCCAGCAGTTTTTACTCCCAGCGGCTGGCAGAGCTGACAC
CTGGATTCAGTGGCGCCGACATCGCCAACATCTGCAACGAGGCCGCTCTGCACGCTGCACGCGAGGGGCA
CACGTCCGTGCACACGTTCAACTTTGAGTATGCCGTGGAGCGCGTCATTGCTGGTACTGCTAAAAAGAGT
AAGATCCTCTCCAAGGAGGAGCAGAGAGTGGTCGCCTTCCATGAGTCTGGCCATGCCTTGGTTGGTTGGC
TGCTGGAGCACACAGAGGCTGTGATGAAGGTCTCCATCGCACCTCGGACAAACGCTGCTTTGGGCTTCTC
TCAGATGCTCCCTCGGGACCAGTACCTCTTCACCAAGGAGCAGCTGTTTGAGCGCATGTGCATGGCCCTA
GGTGGCCGTGCAGCTGAAGCCATCTCATTCAGCAGGGTCACCTCTGGGGCCCAGGATGATTTGAGGAAGG
TTACCCGCATTGCTTACTCCATGGTGAAACAGTTCGGGATGGCTCCCAGCATTGGGCCTGTATCCTTCCC
CGAGGCACAAGAGGGCCTCATGGGCATTGGACGTCGTCCCTTCAGCCAGGGCCTCCAGCAGATGATGGAC
CATGAAGCAAAGCTGCTGGTGGCCAAAGCCTACAGACACACCGAGAAGGTGCTGCTAGACAACCTGGACA
AGCTGCAGGCGTTGGCGAATGCCCTTCTGGAAAAGGAAGTGATAAACTATGAGGACATTGAGGCGCTCAT
TGGCCCGCCGCCCCATGGGCCAAAGAAAATGATTGCACCACAGAAATGGATTGATGCTGAAAAGGAGAGA
CAGGCCTCAGGGGAGGAGGAGGCTCCGGCTCCCTAG

Translation (781 aa):
MAAALLLLRGLRPGPEPRPRRLWGLLSGRGPGLSSGAGARRPYAARGTPVGPAAAGGHAPQSLLLRILTP
SFEGISGLLLKQHIVPNAVRLWPLSGSTLYFNTSRMKQKNKDNDKPKGKTPEDDEEEKRRKEREDQMYRE
RLRTLFIIALVMSLLNSLSTSGGSISWADFVNEMLAKGEVQRVQVVPESDVVEVYLHPGAVVFGRPRLAL
MYRMQVANIDKFEEKLRAAEDELNIESKDRIPVSYKRTGFFGNALYALGMTAVGLAILWYVFRLAGMTGR
EGGFSAFNQLKMARFTIVDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGP
PGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTS
MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFE
QHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKS
KILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQYLFTKEQLFERMCMAL
GGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEGLMGIGRRPFSQGLQQMMD
HEAKLLVAKAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEALIGPPPHGPKKMIAPQKWIDAEKER
QASGEEEAPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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