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Report for CCDS41837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41837.1 Public Homo sapiens 12 CUX2 24 110 108 CCDS HistoryNCBI Gene:23316Re-query CCDS DB by CCDS ID:41837.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261726.11 ENSP00000261726.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261726.11Link to Ensembl Protein Viewer:ENSP00000261726.6Re-query CCDS DB by Nucleotide ID:ENST00000261726Re-query CCDS DB by Protein ID:ENSP00000261726
Original member Current member NCBI NM_015267.4 NP_056082.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015267.4Link to Protein Sequence:NP_056082.2Re-query CCDS DB by Nucleotide ID:NM_015267Re-query CCDS DB by Protein ID:NP_056082Link to BLAST:NP_056082.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056082.2 1486 O14529 1486 100% 0 0

Chromosomal Locations for CCDS 41837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111034178 111034240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111214200 111214310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111217890 111217937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111263761 111263839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111291418 111291552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111293446 111293569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111295333 111295409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111296473 111296539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111298541 111298589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111304210 111304314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111306921 111307112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111307199 111307257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111308285 111308333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111308427 111308526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111310041 111310682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111312100 111312201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111320012 111320775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111322421 111322580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111334441 111334710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111338286 111338474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111341780 111342053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111347524 111348325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4461 nt):
ATGGCCGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGATTTGATCTACGGCGACTCCAGAAGGAGC
TTAATTCCGTCGCTTCTGAGCTGTCTGCACGGCAGGAGGAGAGTGAACATTCTCATAAACATTTAATTGA
ACTCCGCCGGGAATTTAAGAAAAATGTACCTGAGGAAATCAGAGAGATGGTGGCTCCTGTATTAAAAAGC
TTCCAAGCCGAGGTGGTGGCCCTTAGTAAGAGAAGTCAGGAGGCGGAGGCTGCTTTTCTGAGTGTTTACA
AGCAATTAATTGAAGCACCAGACCCCGTGCCTGTGTTTGAGGCGGCACGCAGCCTAGACGACAGACTGCA
GCCCCCCAGCTTTGACCCCAGTGGGCAGCCCCGGCGAGACCTCCACACTTCGTGGAAGAGGAACCCCGAG
CTCCTCAGCCCCAAAGAGCAGAGAGAGGGGACGTCGCCTGCCGGGCCCACGCTGACCGAGGGAAGCCGCC
TCCCAGGCATTCCCGGGAAAGCCCTCCTGACAGAAACCTTGCTGCAGAGAAATGAGGCGGAAAAACAAAA
GGGCCTTCAAGAAGTACAGATCACTTTGGCGGCCAGACTGGGGGAGGCAGAGGAGAAAATCAAAGTCCTA
CATTCAGCGCTAAAGGCTACGCAGGCAGAGCTGCTAGAGCTGCGGCGGAAGTACGACGAGGAGGCAGCAT
CCAAGGCAGATGAAGTCGGCCTGATCATGACCAACCTGGAGAAAGCTAATCAGCGAGCTGAGGCTGCCCA
GCGGGAGGTGGAAAGTCTCCGGGAACAGCTGGCCTCTGTCAACAGCTCCATCCGCCTGGCTTGCTGCTCT
CCCCAGGGGCCCAGTGGGGATAAGGTGAACTTCACTCTGTGCTCGGGCCCTCGGCTGGAGGCCGCGCTGG
CCTCCAAGGACAGGGAGATCCTGCGGCTGCTGAAGGACGTGCAGCACCTCCAGAGCTCACTGCAGGAGCT
GGAGGAGGCATCCGCCAACCAGATCGCCGACCTGGAGCGGCAGCTCACGGCCAAGTCCGAGGCCATAGAA
AAGCTGGAAGAGAAGCTCCAGGCCCAGTCTGACTATGAGGAAATTAAAACGGAGCTGAGCATCCTGAAAG
CCATGAAGCTGGCCTCCAGCACCTGCAGCCTCCCCCAGGGCATGGCCAAGCCTGAAGACTCACTGCTTAT
TGCAAAGGAGGCCTTCTTCCCCACGCAGAAATTCCTTCTGGAGAAGCCCAGCCTCCTGGCCAGCCCTGAG
GAAGACCCATCAGAGGACGATTCCATCAAGGATTCACTGGGCACGGAGCAGTCCTACCCCTCCCCTCAGC
AGCTCCCACCTCCACCAGGGCCAGAAGACCCCCTGTCTCCCAGCCCCGGGCAGCCCCTGCTGGGCCCCAG
CTTGGGGCCTGACGGCACTCGGACTTTCTCGCTGTCCCCCTTCCCCAGCCTGGCATCAGGGGAGAGACTG
ATGATGCCCCCAGCCGCCTTCAAGGGAGAGGCGGGCGGCCTGCTGGTGTTCCCCCCAGCCTTCTATGGCG
CCAAGCCCCCCACAGCCCCTGCCACCCCGGCCCCTGGCCCTGAGCCACTGGGCGGTCCTGAGCCCGCGGA
TGGTGGTGGGGGCGGAGCGGCGGGGCCCGGGGCAGAGGAGGAGCAGCTGGACACGGCAGAGATCGCCTTC
CAGGTGAAGGAGCAGCTGCTGAAACACAACATCGGGCAGCGGGTGTTTGGGCATTACGTGCTGGGGCTGT
CGCAGGGCTCGGTCAGCGAGATCCTAGCCCGGCCCAAGCCCTGGCGCAAGCTCACGGTGAAGGGCAAGGA
GCCCTTCATCAAGATGAAGCAGTTCCTGTCGGATGAGCAGAATGTACTGGCGCTCAGGACCATCCAAGTG
CGGCAGCGAGGCAGCATCACCCCGAGAATCCGCACGCCTGAGACAGGCTCAGACGACGCCATCAAGAGCA
TTCTAGAGCAGGCCAAGAAGGAGATCGAGTCGCAGAAGGGCGGCGAGCCCAAGACCTCGGTGGCCCCGCT
GAGCATCGCCAACGGCACGACCCCCGCCAGCACCTCGGAGGACGCCATCAAGAGCATCCTGGAGCAGGCA
CGCCGTGAGATGCAGGCGCAACAGCAGGCGCTGCTGGAGATGGAGGTGGCGCCCAGGGGCCGCTCGGTGC
CCCCCTCGCCCCCGGAGCGGCCATCACTGGCCACCGCGAGCCAGAACGGGGCCCCGGCCTTGGTGAAGCA
GGAGGAGGGCAGCGGGGGCCCCGCGCAGGCGCCGCTCCCGGTCCTGTCCCCCGCCGCCTTCGTGCAGAGC
ATCATCCGCAAGGTCAAGTCCGAGATCGGCGACGCCGGCTACTTCGACCACCACTGGGCCTCCGACCGCG
GCCTGCTCAGCCGCCCCTACGCCTCCGTGTCGCCCTCGCTGTCCTCCTCCTCCTCCTCTGGCTACTCTGG
CCAGCCCAACGGCCGCGCCTGGCCCCGCGGGGACGAGGCCCCTGTGCCCCCCGAGGACGAGGCGGCGGCA
GGGGCGGAGGACGAACCCCCCAGGACGGGCGAGCTCAAGGCTGAGGGCGCGACGGCCGAGGCGGGCGCGC
GGCTGCCCTACTACCCGGCCTACGTGCCGCGCACCCTGAAGCCCACCGTGCCGCCGCTGACCCCCGAGCA
GTACGAGCTGTACATGTACCGTGAGGTAGACACGCTGGAGCTCACCCGCCAGGTCAAGGAGAAGCTGGCC
AAGAACGGCATCTGCCAGAGGATCTTCGGGGAGAAGGTGCTGGGCCTGTCACAGGGCAGCGTGAGCGACA
TGCTGTCCCGGCCGAAGCCATGGAGCAAGCTGACGCAGAAGGGGCGGGAGCCCTTCATCCGCATGCAGCT
GTGGCTCTCTGACCAGCTCGGCCAGGCAGTGGGCCAGCAGCCTGGTGCCTCCCAGGCCAGTCCCACAGAA
CCAAGGTCCTCACCATCCCCACCCCCCAGCCCCACAGAGCCTGAGAAGAGCTCCCAGGAGCCGTTGAGCC
TGTCCCTGGAGAGCAGCAAGGAGAACCAGCAGCCAGAGGGCCGCTCCAGCTCCTCGTTGAGCGGGAAGAT
GTACTCAGGCAGCCAGGCCCCAGGGGGCATCCAGGAGATCGTGGCCATGTCCCCCGAGCTGGACACGTAC
TCCATCACCAAGAGGGTGAAGGAGGTCCTCACAGACAACAATCTAGGGCAGCGGCTGTTTGGGGAAAGCA
TCCTGGGTCTGACACAGGGCTCCGTGTCTGACCTGCTGTCCCGGCCCAAACCCTGGCACAAGCTGAGCCT
GAAGGGGCGGGAGCCTTTTGTCCGCATGCAGCTGTGGCTCAATGACCCCCATAACGTGGAGAAGCTGAGG
GATATGAAGAAGCTGGAGAAGAAAGCCTACCTGAAACGTCGCTATGGCCTCATCAGCACCGGCTCAGACA
GTGAGTCCCCGGCCACCCGCTCAGAGTGCCCCAGCCCCTGCCTGCAGCCCCAGGACCTGAGCCTCCTGCA
GATCAAGAAGCCCCGGGTGGTGCTGGCACCCGAGGAGAAGGAGGCACTGCGGAAGGCCTATCAGCTGGAA
CCCTACCCCTCGCAGCAGACCATCGAGCTCCTCTCCTTCCAGCTCAACCTCAAGACCAACACCGTCATCA
ACTGGTTCCACAACTACAGGTCCCGGATGCGCCGGGAGATGTTGGTGGAGGGGACCCAGGATGAGCCAGA
CCTTGATCCAAGCGGGGGTCCTGGAATCCTACCGCCAGGCCACTCCCACCCAGACCCCACCCCGCAGAGC
CCTGACTCTGAGACTGAGGACCAGAAGCCAACCGTGAAGGAACTGGAGCTTCAGGAGGGCCCTGAGGAGA
ACAGCACACCCCTGACCACCCAGGACAAGGCCCAAGTGAGGATCAAGCAGGAACAGATGGAGGAGGATGC
TGAGGAAGAGGCAGGCAGCCAGCCCCAGGACTCAGGGGAGCTGGACAAAGGCCAAGGTCCCCCCAAAGAG
GAGCATCCCGACCCTCCGGGTAATGATGGACTCCCAAAAGTGGCTCCCGGGCCCCTCCTTCCAGGTGGAT
CCACCCCAGACTGTCCCTCACTTCATCCCCAACAGGAGAGTGAGGCCGGGGAGCGACTTCACCCGGACCC
TTTAAGTTTTAAGTCAGCCTCAGAGTCCTCACGCTGCAGCCTGGAGGTGTCACTGAACTCGCCCTCGGCC
GCCTCCTCACCAGGCCTCATGATGTCTGTGTCACCTGTCCCCTCCTCCTCAGCTCCCATCTCCCCATCCC
CACCTGGCGCCCCCCCTGCCAAAGTGCCGAGTGCCAGCCCCACTGCTGACATGGCTGGAGCCTTGCACCC
CAGTGCCAAGGTGAACCCCAACTTGCAGCGGCGGCATGAGAAGATGGCCAATCTGAACAACATCATTTAC
CGAGTAGAGCGGGCTGCCAATCGGGAGGAGGCCCTGGAGTGGGAGTTCTGA

Translation (1486 aa):
MAANVGSMFQYWKRFDLRRLQKELNSVASELSARQEESEHSHKHLIELRREFKKNVPEEIREMVAPVLKS
FQAEVVALSKRSQEAEAAFLSVYKQLIEAPDPVPVFEAARSLDDRLQPPSFDPSGQPRRDLHTSWKRNPE
LLSPKEQREGTSPAGPTLTEGSRLPGIPGKALLTETLLQRNEAEKQKGLQEVQITLAARLGEAEEKIKVL
HSALKATQAELLELRRKYDEEAASKADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCS
PQGPSGDKVNFTLCSGPRLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIE
KLEEKLQAQSDYEEIKTELSILKAMKLASSTCSLPQGMAKPEDSLLIAKEAFFPTQKFLLEKPSLLASPE
EDPSEDDSIKDSLGTEQSYPSPQQLPPPPGPEDPLSPSPGQPLLGPSLGPDGTRTFSLSPFPSLASGERL
MMPPAAFKGEAGGLLVFPPAFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAEEEQLDTAEIAF
QVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRTIQV
RQRGSITPRIRTPETGSDDAIKSILEQAKKEIESQKGGEPKTSVAPLSIANGTTPASTSEDAIKSILEQA
RREMQAQQQALLEMEVAPRGRSVPPSPPERPSLATASQNGAPALVKQEEGSGGPAQAPLPVLSPAAFVQS
IIRKVKSEIGDAGYFDHHWASDRGLLSRPYASVSPSLSSSSSSGYSGQPNGRAWPRGDEAPVPPEDEAAA
GAEDEPPRTGELKAEGATAEAGARLPYYPAYVPRTLKPTVPPLTPEQYELYMYREVDTLELTRQVKEKLA
KNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAVGQQPGASQASPTE
PRSSPSPPPSPTEPEKSSQEPLSLSLESSKENQQPEGRSSSSLSGKMYSGSQAPGGIQEIVAMSPELDTY
SITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLR
DMKKLEKKAYLKRRYGLISTGSDSESPATRSECPSPCLQPQDLSLLQIKKPRVVLAPEEKEALRKAYQLE
PYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRREMLVEGTQDEPDLDPSGGPGILPPGHSHPDPTPQS
PDSETEDQKPTVKELELQEGPEENSTPLTTQDKAQVRIKQEQMEEDAEEEAGSQPQDSGELDKGQGPPKE
EHPDPPGNDGLPKVAPGPLLPGGSTPDCPSLHPQQESEAGERLHPDPLSFKSASESSRCSLEVSLNSPSA
ASSPGLMMSVSPVPSSSAPISPSPPGAPPAKVPSASPTADMAGALHPSAKVNPNLQRRHEKMANLNNIIY
RVERAANREEALEWEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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