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Report for CCDS32538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32538.1 Public Homo sapiens 17 WSCD1 24 110 108 CCDS HistoryNCBI Gene:23302Re-query CCDS DB by CCDS ID:32538.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317744.10 ENSP00000323087.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317744.10Link to Ensembl Protein Viewer:ENSP00000323087.5Re-query CCDS DB by Nucleotide ID:ENST00000317744Re-query CCDS DB by Protein ID:ENSP00000323087
Original member Current member EBI ENST00000574232.5 ENSP00000458374.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574232.5Link to Ensembl Protein Viewer:ENSP00000458374.1Re-query CCDS DB by Nucleotide ID:ENST00000574232Re-query CCDS DB by Protein ID:ENSP00000458374
Original member Current member EBI ENST00000574946.5 ENSP00000460825.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574946.5Link to Ensembl Protein Viewer:ENSP00000460825.1Re-query CCDS DB by Nucleotide ID:ENST00000574946Re-query CCDS DB by Protein ID:ENSP00000460825
Original member Current member NCBI NM_001388405.1 NP_001375334.1 Accepted alive Link to Nucleotide Sequence:NM_001388405.1Link to Protein Sequence:NP_001375334.1Re-query CCDS DB by Nucleotide ID:NM_001388405Re-query CCDS DB by Protein ID:NP_001375334Link to BLAST:NP_001375334.1
Original member Current member NCBI NM_001388406.1 NP_001375335.1 Accepted alive Link to Nucleotide Sequence:NM_001388406.1Link to Protein Sequence:NP_001375335.1Re-query CCDS DB by Nucleotide ID:NM_001388406Re-query CCDS DB by Protein ID:NP_001375335Link to BLAST:NP_001375335.1
Original member Current member NCBI NM_001388407.1 NP_001375336.1 Accepted alive Link to Nucleotide Sequence:NM_001388407.1Link to Protein Sequence:NP_001375336.1Re-query CCDS DB by Nucleotide ID:NM_001388407Re-query CCDS DB by Protein ID:NP_001375336Link to BLAST:NP_001375336.1
Original member Current member NCBI NM_015253.2 NP_056068.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015253.2Link to Protein Sequence:NP_056068.1Re-query CCDS DB by Nucleotide ID:NM_015253Re-query CCDS DB by Protein ID:NP_056068Link to BLAST:NP_056068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001375334.1 575 Q658N2 575 100% 0 0
NP_001375335.1 575 Q658N2 575 100% 0 0
NP_001375336.1 575 Q658N2 575 100% 0 0
NP_056068.1 575 Q658N2 575 100% 0 0

Chromosomal Locations for CCDS 32538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6080659 6081085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6087990 6088104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6090321 6090505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6095102 6095223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6109607 6109766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6110771 6110935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6117988 6118188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6120309 6120661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGCCAAACCTTTCTTCCGACTCCAGAAGTTTCTCCGCCGAACACAGTTCCTGCTGTTCTTCCTCACGG
CTGCCTACCTGATGACCGGCAGCCTGCTGCTGCTGCAGCGGGTCCGCGTGGCTCTCCCACAGGGCCCCCG
GGCACCCGGCCCCCTGCAGACCTTGCCAGTGGCCGCCGTGGCGCTGGGCGTGGGCTTGCTGGACAGCAGA
GCCCTGCACGACCCTCGAGTCAGCCCAGAGCTGCTGCTGGGTGTGGACATGCTGCAGAGCCCCCTGACCC
GGCCCCGGCCCGGCCCCCGCTGGCTCCGGAGCCGCAACTCGGAGCTGCGTCAGTTGCGTCGCCGCTGGTT
CCACCACTTCATGAGTGACTCCCAGGGACCGCCCGCCCTGGGCCCCGAGGCTGCCAGGCCCGCCATCCAC
AGCCGAGGCACCTACATTGGATGCTTCAGTGACGATGGCCACGAGAGGACTCTGAAAGGAGCTGTGTTTT
ATGACTTGAGAAAGATGACTGTCTCCCACTGCCAGGATGCGTGTGCTGAGCGGTCCTATGTCTACGCCGG
CTTGGAGGCCGGGGCGGAGTGTTACTGCGGGAACCGGCTGCCAGCGGTGAGCGTGGGGCTGGAAGAGTGT
AACCATGAGTGCAAAGGCGAGAAGGGCTCTGTGTGCGGGGCTGTGGACCGGCTCTCCGTGTACCGTGTGG
ACGAGCTGCAGCCGGGCTCCAGGAAGCGGCGGACCGCCACCTACCGCGGATGCTTCCGACTGCCAGAGAA
CATCACACATGCCTTCCCCAGCTCCCTGATACAGGCCAATGTGACCGTGGGGACTTGCTCGGGCTTTTGT
TCCCAGAAAGAGTTCCCCTTGGCCATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCCCCGGT
TCAACCTGCGGGATGCCATGGACAGCTCAGTATGTGGCCAGGACCCTGAGGCACAGAGGCTGGCAGAATA
CTGTGAGGTCTACCAGACACCTGTGCAAGACACTCGTTGTACAGACAGGAGGTTCCTGCCTAACAAATCC
AAAGTGTTTGTGGCTTTGTCAAGCTTCCCAGGAGCCGGGAACACATGGGCACGGCACCTCATTGAGCATG
CCACTGGCTTCTATACAGGGAGCTACTACTTTGATGGAACCCTCTACAACAAAGGGTTCAAGGGCGAAAA
GGACCACTGGCGGAGCCGACGCACCATCTGTGTCAAAACCCACGAGAGTGGCAGGAGGGAGATTGAGATG
TTTGATTCAGCCATCCTGCTAATCCGGAACCCATACAGGTCCCTGGTGGCAGAATTCAACAGAAAATGTG
CCGGGCACCTGGGATATGCAGCTGACCGCAACTGGAAGAGCAAAGAGTGGCCGGACTTTGTCAACAGCTA
CGCCTCGTGGTGGTCCTCGCACGTCCTGGACTGGCTCAAGTACGGGAAGCGGCTGCTGGTGGTGCACTAC
GAGGAGCTGCGGCGCAGCCTGGTGCCCACGTTACGGGAGATGGTGGCCTTCCTCAACGTGTCTGTGAGCG
AGGAGCGGCTGCTCTGCGTGGAGAACAACAAGGAGGGCAGCTTCCGGCGGCGCGGCCGGCGCTCCCACGA
CCCTGAGCCCTTCACCCCGGAGATGAAAGACTTGATCAATGGCTACATCCGGACGGTGGACCAAGCCCTG
CGTGACCACAACTGGACGGGGCTGCCCAGGGAGTATGTGCCCAGATGA

Translation (575 aa):
MAKPFFRLQKFLRRTQFLLFFLTAAYLMTGSLLLLQRVRVALPQGPRAPGPLQTLPVAAVALGVGLLDSR
ALHDPRVSPELLLGVDMLQSPLTRPRPGPRWLRSRNSELRQLRRRWFHHFMSDSQGPPALGPEAARPAIH
SRGTYIGCFSDDGHERTLKGAVFYDLRKMTVSHCQDACAERSYVYAGLEAGAECYCGNRLPAVSVGLEEC
NHECKGEKGSVCGAVDRLSVYRVDELQPGSRKRRTATYRGCFRLPENITHAFPSSLIQANVTVGTCSGFC
SQKEFPLAILRGWECYCAYPTPRFNLRDAMDSSVCGQDPEAQRLAEYCEVYQTPVQDTRCTDRRFLPNKS
KVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEM
FDSAILLIRNPYRSLVAEFNRKCAGHLGYAADRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHY
EELRRSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRSHDPEPFTPEMKDLINGYIRTVDQAL
RDHNWTGLPREYVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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