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Report for CCDS19974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19974.1 Public Mus musculus 6 Cpa2 23 108 98 CCDS HistoryNCBI Gene:232680Re-query CCDS DB by CCDS ID:19974.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096066.4 ENSMUSP00000093771.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096066.4Link to Ensembl Protein Viewer:ENSMUSP00000093771.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096066Re-query CCDS DB by Protein ID:ENSMUSP00000093771
Original member Current member NCBI NM_001024698.3 NP_001019869.1 Accepted alive Link to Nucleotide Sequence:NM_001024698.3Link to Protein Sequence:NP_001019869.1Re-query CCDS DB by Nucleotide ID:NM_001024698Re-query CCDS DB by Protein ID:NP_001019869Link to BLAST:NP_001019869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019869.1 417 Q504N0 417 100% 0 0

Chromosomal Locations for CCDS 19974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30541665 30541729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30544135 30544216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30544891 30545025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30545504 30545599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30547105 30547206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30549242 30549340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30550745 30550855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30551966 30552056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30554164 30554363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30557672 30557756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30564238 30564425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGAGGTTGACCCCGTTATTGGTTGCCCTATTTGGGTATATCTACTGTCAAGAAACATTTGTGGGAGATC
AA
GTTCTTGAGGTGATCCCGAATGATGAAGAGCAAATTAAGACTCTGCTGCAACTGGAGGCCGAAGAGCA
C
CTTGAGCTTGATTTTTGGAAATCCCCCAGCGTCCCCAGGCAGACAGTCCATGTCCGAGTTCCTTTTGCC
AGC
ATCCAGGACGTCAAAGTTTTCCTGGAGTCCCAGGGGATTACTTATTCCATCATGATCGAAGATGTTC
AA
GTTCTGTTGGATCAAGAGCGTGAAGAGATGCTGTTCAACCAGCAAAGAGAGCGTGGCACTAACTTCAA
C
TTTGGGGCCTACCATACCCTGGAAGAGATTTACCAAGAAATGGATAACCTCGTGGCTGAGAACCCTGGT
CTA
GTGAGCAAAGTGAATATCGGTTCATCTTTTGAAAATCGGCCCATGAATGTGCTCAAGTTCAGCACCG
GA
GGAGACAAGCCAGCCATCTGGCTTGATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGC
A
CTGTGGACAGCAAATAAGATTGCGTCTGATTATGGGACTGATCCAGCCATCACTTCTCTTCTCAATACT
CTG
GATGTCTTCCTGCTGCCTGTCACGAACCCTGATGGATATGTGTTCTCCCAAACCTCCAATCGTATGT
GG
CGAAAGACCCGGTCTAAACGGTCGGGAAGCTTCTGTGTTGGTGTGGATCCTAATCGGAACTGGGACGC
A
AATTTCGGAGGACCTGGAGCCAGTAGCAACCCTTGCTCTGATTCATACCATGGACCCAGTCCCAATTCT
GAA
GTTGAAGTGAAATCCATAGTGGACTTCATCAAGAGCCACGGGAAAGTCAAAGCGTTCATTACCCTTC
AC
AGCTATTCCCAACTGCTCATGTTCCCCTATGGCTATAAATGTGCCAAGCCAGATGACTTTAATGAGCT
G
GATGAAGTGGCCCAAAGGGCTGCCCAGTCTTTGAAAAGACTCCACGGCACCAGTTACAAAGTGGGACCC
ATC
TGTTCTGTCATCTACCAGGCCAGTGGCGGAAGCATCGACTGGGCTTATGACCTTGGCATCAAATACT
CA
TTTGCCTTTGAACTGAGAGACACAGGCTACTATGGCTTCCTCCTGCCAGCCAAGCAGATCTTGCCCAC
A
GCAGAAGAGACCTGGCTTGGCCTGAAGACCATCATGGAGCACGTACGAGACCACCCCTACTAG


Translation (417 aa):
MRLTPLLVALFGYIYCQETFVGDQVLEVIPNDEEQIKTLLQLEAEEHLELDFWKSPSVPRQTVHVRVPFA
S
IQDVKVFLESQGITYSIMIEDVQ
VLLDQEREEMLFNQQRERGTNFNFGAYHTLEEIYQEMDNLVAENPG
L
VSKVNIGSSFENRPMNVLK
FSTGGDKPAIWLDAGIHAREWVTQATALWTANKIASDYGTDPAITSLLNT
L
DVFLLPVTNPDGYVFSQTS
NRMWRKTRSKRSGSFCVGVDPNRNWDANFGGPGASSNPCSDSYHGPSPNS
E
VEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCAKPDDFNEL
DEVAQRAAQSLKRLHGTSYKVGP
I
CSVI
YQASGGSIDWAYDLGIKYSFAFELRDTGYYGFLLPAKQILPTAEETWLGLKTIMEHVRDHPY



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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