NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19974.1 Public Mus musculus 6 Cpa2 23 108 98 CCDS HistoryNCBI Gene:232680Re-query CCDS DB by CCDS ID:19974.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096066.4 ENSMUSP00000093771.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096066.4Link to Ensembl Protein Viewer:ENSMUSP00000093771.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096066Re-query CCDS DB by Protein ID:ENSMUSP00000093771
Original member Current member NCBI NM_001024698.3 NP_001019869.1 Accepted alive Link to Nucleotide Sequence:NM_001024698.3Link to Protein Sequence:NP_001019869.1Re-query CCDS DB by Nucleotide ID:NM_001024698Re-query CCDS DB by Protein ID:NP_001019869Link to BLAST:NP_001019869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019869.1 417 Q504N0 417 100% 0 0

Chromosomal Locations for CCDS 19974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30541665 30541729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30544135 30544216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30544891 30545025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30545504 30545599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30547105 30547206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30549242 30549340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30550745 30550855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30551966 30552056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30554164 30554363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30557672 30557756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30564238 30564425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGAGGTTGACCCCGTTATTGGTTGCCCTATTTGGGTATATCTACTGTCAAGAAACATTTGTGGGAGATC
AAGTTCTTGAGGTGATCCCGAATGATGAAGAGCAAATTAAGACTCTGCTGCAACTGGAGGCCGAAGAGCA
CCTTGAGCTTGATTTTTGGAAATCCCCCAGCGTCCCCAGGCAGACAGTCCATGTCCGAGTTCCTTTTGCC
AGCATCCAGGACGTCAAAGTTTTCCTGGAGTCCCAGGGGATTACTTATTCCATCATGATCGAAGATGTTC
AAGTTCTGTTGGATCAAGAGCGTGAAGAGATGCTGTTCAACCAGCAAAGAGAGCGTGGCACTAACTTCAA
CTTTGGGGCCTACCATACCCTGGAAGAGATTTACCAAGAAATGGATAACCTCGTGGCTGAGAACCCTGGT
CTAGTGAGCAAAGTGAATATCGGTTCATCTTTTGAAAATCGGCCCATGAATGTGCTCAAGTTCAGCACCG
GAGGAGACAAGCCAGCCATCTGGCTTGATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGC
ACTGTGGACAGCAAATAAGATTGCGTCTGATTATGGGACTGATCCAGCCATCACTTCTCTTCTCAATACT
CTGGATGTCTTCCTGCTGCCTGTCACGAACCCTGATGGATATGTGTTCTCCCAAACCTCCAATCGTATGT
GGCGAAAGACCCGGTCTAAACGGTCGGGAAGCTTCTGTGTTGGTGTGGATCCTAATCGGAACTGGGACGC
AAATTTCGGAGGACCTGGAGCCAGTAGCAACCCTTGCTCTGATTCATACCATGGACCCAGTCCCAATTCT
GAAGTTGAAGTGAAATCCATAGTGGACTTCATCAAGAGCCACGGGAAAGTCAAAGCGTTCATTACCCTTC
ACAGCTATTCCCAACTGCTCATGTTCCCCTATGGCTATAAATGTGCCAAGCCAGATGACTTTAATGAGCT
GGATGAAGTGGCCCAAAGGGCTGCCCAGTCTTTGAAAAGACTCCACGGCACCAGTTACAAAGTGGGACCC
ATCTGTTCTGTCATCTACCAGGCCAGTGGCGGAAGCATCGACTGGGCTTATGACCTTGGCATCAAATACT
CATTTGCCTTTGAACTGAGAGACACAGGCTACTATGGCTTCCTCCTGCCAGCCAAGCAGATCTTGCCCAC
AGCAGAAGAGACCTGGCTTGGCCTGAAGACCATCATGGAGCACGTACGAGACCACCCCTACTAG

Translation (417 aa):
MRLTPLLVALFGYIYCQETFVGDQVLEVIPNDEEQIKTLLQLEAEEHLELDFWKSPSVPRQTVHVRVPFA
SIQDVKVFLESQGITYSIMIEDVQVLLDQEREEMLFNQQRERGTNFNFGAYHTLEEIYQEMDNLVAENPG
LVSKVNIGSSFENRPMNVLKFSTGGDKPAIWLDAGIHAREWVTQATALWTANKIASDYGTDPAITSLLNT
LDVFLLPVTNPDGYVFSQTSNRMWRKTRSKRSGSFCVGVDPNRNWDANFGGPGASSNPCSDSYHGPSPNS
EVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCAKPDDFNELDEVAQRAAQSLKRLHGTSYKVGP
ICSVIYQASGGSIDWAYDLGIKYSFAFELRDTGYYGFLLPAKQILPTAEETWLGLKTIMEHVRDHPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH