NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS41279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41279.1 Public Homo sapiens 1 OTUD3 24 110 108 CCDS HistoryNCBI Gene:23252Re-query CCDS DB by CCDS ID:41279.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375120.4 ENSP00000364261.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375120.4Link to Ensembl Protein Viewer:ENSP00000364261.3Re-query CCDS DB by Nucleotide ID:ENST00000375120Re-query CCDS DB by Protein ID:ENSP00000364261
Original member Current member NCBI NM_015207.2 NP_056022.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015207.2Link to Protein Sequence:NP_056022.1Re-query CCDS DB by Nucleotide ID:NM_015207Re-query CCDS DB by Protein ID:NP_056022Link to BLAST:NP_056022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056022.1 398 Q5T2D3 398 100% 0 0

Chromosomal Locations for CCDS 41279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19882514 19882734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19890385 19890533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19894368 19894480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19897540 19897662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19904267 19904398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19904891 19904987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19906432 19906616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19907570 19907746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGTCCCGAAAGCAGGCGGCGAAGAGCCGGCCGGGCAGCGGCAGCCGGAAAGCCGAGGCCGAGCGCAAGC
GGGACGAGCGGGCGGCGCGCCGGGCCCTGGCCAAGGAGCGGCGGAATCGGCCGGAGTCTGGCGGCGGCGG
CGGCTGCGAGGAGGAGTTCGTCAGCTTCGCCAACCAGCTGCAGGCCCTGGGGCTGAAGCTGCGGGAGGTG
CCGGGGGACGGCAATTGCTTGTTCAGAGCTCTTGGTGATCAATTGGAGGGACACTCACGAAATCATCTCA
AGCACAGACAGGAGACAGTGGACTACATGATAAAGCAGCGGGAAGATTTTGAACCCTTTGTAGAAGATGA
CATTCCTTTTGAGAAGCATGTGGCCAGTTTGGCAAAGCCTGGTACTTTTGCTGGCAATGATGCAATTGTA
GCCTTTGCAAGAAATCATCAGTTGAATGTAGTGATTCATCAACTTAATGCCCCTTTGTGGCAGATTCGTG
GTACAGAGAAAAGCAGCGTGAGGGAGTTACACATCGCATATCGGTATGGAGAGCACTACGACAGTGTTCG
GAGGATCAATGACAACTCAGAGGCACCTGCACATCTCCAGACGGATTTTCAGATGCTTCATCAAGATGAA
TCAAATAAAAGAGAAAAGATCAAGACAAAGGGAATGGACTCTGAAGACGACCTGAGAGATGAAGTAGAGG
ATGCTGTCCAGAAAGTTTGTAATGCAACTGGATGTTCAGATTTTAATTTAATAGTCCAGAACCTGGAAGC
TGAAAATTATAATATTGAATCTGCAATAATTGCCGTGCTTCGGATGAACCAAGGGAAGAGAAATAATGCA
GAAGAGAATCTTGAGCCCAGTGGTCGAGTGCTGAAGCAGTGTGGCCCTTTGTGGGAGGAGGGTGGCAGTG
GTGCCAGAATCTTTGGAAATCAGGGCTTAAATGAAGGCAGGACCGAAAACAATAAGGCACAGGCCAGCCC
TAGTGAAGAAAACAAAGCAAATAAAAACCAGCTCGCAAAGGTCACAAACAAACAGAGGCGAGAACAGCAG
TGGATGGAGAAGAAGAAGCGGCAGGAGGAGAGGCACCGCCACAAAGCCCTGGAGAGCAGAGGTAGCCACA
GGGACAATAACAGAAGCGAAGCAGAGGCGAACACGCAGGTCACCTTGGTGAAGACCTTCGCCGCTCTCAA
CATCTGA

Translation (398 aa):
MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREV
PGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIV
AFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDFQMLHQDE
SNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNA
EENLEPSGRVLKQCGPLWEEGGSGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQ
WMEKKKRQEERHRHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH