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Report for CCDS51827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51827.1 Public Mus musculus 6 Smyd5 23 108 98 CCDS HistoryNCBI Gene:232187Re-query CCDS DB by CCDS ID:51827.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045693.7 ENSMUSP00000048537.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045693.7Link to Ensembl Protein Viewer:ENSMUSP00000048537.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045693Re-query CCDS DB by Protein ID:ENSMUSP00000048537
Original member Current member NCBI NM_144918.2 NP_659167.2 Accepted alive Link to Nucleotide Sequence:NM_144918.2Link to Protein Sequence:NP_659167.2Re-query CCDS DB by Nucleotide ID:NM_144918Re-query CCDS DB by Protein ID:NP_659167Link to BLAST:NP_659167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659167.2 416 Q3TYX3 416 100% 0 0

Chromosomal Locations for CCDS 51827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85432005 85432100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85438108 85438216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85438750 85438889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85439657 85439775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85440106 85440175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85440640 85440744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85441560 85441622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85441738 85441808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85442111 85442217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85442599 85442655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85444243 85444337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85444918 85444988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85445069 85445216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGCGGCCTCCATGTGCGACGTGTTCTCCTTCTGCGTGGGCGTGGCGGACCGTGCCCGGGGTTCCGTGG
AAGTCCGTTATGTGGACAGCATCAAGGGAAAGGGACTGTTTGCCACACAGCTGATTCGGAAGGGAGAGAC
CATCTTCATTGAAAGACCTCTGGTAGCTGCGCAGTTCCTCTGGAATGCACTTTATCAGTACAGGGCCTGT
GACCACTGCCTTCGGGCACTGGAGAAGGCAGAGGAGAATGCCCAGAGGCTGACTGGGAAACCAAGCCAGA
TTCTACCACACCCAGAGCTATGCAGTGTGCGTAAGGACCTCCACCAGAACTGCCCCCATTGCCAGGTGAT
GTACTGCAGTGCAGAATGTCGGCTAGCAGCTGCAGAGCAGTACCACCAAATCCTGTGCCCAGGCCCATCC
CATGACCCCCGGCACCCCCTCAATAAGCTGCAGGAGGCATGGAGGAGTGTTCACTATCCTCCTGAGACTG
CGAGTATAATGCTGATGGCCCGGATGGTAGCCACGGTGAAACAGGCCAAGGACAAGGACCACTGGGTCAG
ACTCTTCAACCACTTCTGCAGCAGGACAGCCAACCAGGAGCAGGCAATTGTCCACAAACTCCTAAAGGGC
AAGTTCAAGGACCAGCTGGAACTTCTGCTTGGGCTCTTCAAAGAGGCCCTTTATGAAGAGGCTCTCAGTC
TGTGGTTCACACCAGAAGGATTCCGGTCTCTCTTTGCCCTTGTTGGGACCAATGGTCAAGGAATCGGAAC
CAGTTCCCTCAGCCAATGGGTGCACGCCTGTGATGCCCTGGAGCTGACGCCTCAGGACCGGGAACAACTA
GACACCTTCATTGACCAGCTGTACAAGGACATCGAGGCAGCAACCGGAGAGTTCCTTAACTGTGAAGGAT
CTGGCCTCTTCGTGCTTCAAAGCTGCTGCAACCACAGCTGTGTCCCCAACGCGGAGACCTCCTTTCCAGA
AAACAACTTCGTTTTACATGTTACTGCCCTGGAGGATATTAAGCCAGGCGAGGAAATATGTATCAGCTAC
TTAGACTGCTGTCAGCGGGAGCGCAGCCGACACAGCCGACACAAGATCCTCAGGGAGAACTACTTGTTCA
ACTGTTCCTGTCCCAAATGCCTGGCAGAGGCTGATGACCCCAATGTGACCTCAGAAGAGGAGGAAGAGGA
AGATGAGGAGGAAGGAGAGCCAGAAGATGCAGAGCTAGGGGATGAGATGACCGACGTGTGA

Translation (416 aa):
MAASMCDVFSFCVGVADRARGSVEVRYVDSIKGKGLFATQLIRKGETIFIERPLVAAQFLWNALYQYRAC
DHCLRALEKAEENAQRLTGKPSQILPHPELCSVRKDLHQNCPHCQVMYCSAECRLAAAEQYHQILCPGPS
HDPRHPLNKLQEAWRSVHYPPETASIMLMARMVATVKQAKDKDHWVRLFNHFCSRTANQEQAIVHKLLKG
KFKDQLELLLGLFKEALYEEALSLWFTPEGFRSLFALVGTNGQGIGTSSLSQWVHACDALELTPQDREQL
DTFIDQLYKDIEAATGEFLNCEGSGLFVLQSCCNHSCVPNAETSFPENNFVLHVTALEDIKPGEEICISY
LDCCQRERSRHSRHKILRENYLFNCSCPKCLAEADDPNVTSEEEEEEDEEEGEPEDAELGDEMTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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