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Report for CCDS20239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20239.1 Public Mus musculus 6 Tmem150a 23 108 98 CCDS HistoryNCBI Gene:232086Re-query CCDS DB by CCDS ID:20239.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069695.8 ENSMUSP00000063977.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069695.8Link to Ensembl Protein Viewer:ENSMUSP00000063977.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000069695Re-query CCDS DB by Protein ID:ENSMUSP00000063977
Original member Current member NCBI NM_144916.3 NP_659165.1 Accepted alive Link to Nucleotide Sequence:NM_144916.3Link to Protein Sequence:NP_659165.1Re-query CCDS DB by Nucleotide ID:NM_144916Re-query CCDS DB by Protein ID:NP_659165Link to BLAST:NP_659165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659165.1 271 Q91WN2 271 100% 0 0

Chromosomal Locations for CCDS 20239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72356248 72356312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72356722 72356769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72357050 72357136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72357949 72358016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72358308 72358435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72358579 72358756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72359006 72359247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGACCGCCTGGATCCTCCTTCCTGTCAGCCTGTCAGCCTTCTCCATCACCGGCATATGGACTGTGTATG
CCATGGCCGTGATGAACCGCCACGTGTGCCCAGTGGAGAACTGGTCCTACAATGAATCCTGCTCTCCTGA
CCCTGCTGAACAAGGGGGCCCTAAGAGCTGCTGCACCCTGGATGATGTTCCTCTCATCAGCAAGTGTGGC
ACATACCCCCCGGAGAGCTGCCTCTTCAGCCTCATTGGCAACATGGGTGCTGTTATGGTGGCCCTCATCT
GCCTCCTTCGGTACGGGCAGCTCCTGGAACAGAGCCGGCACTCCTGGATCAATACCACTGCACTCATCAC
TGGTTGCACCAACGCTGCAGGCCTCGTGGTGGTCGGCAATTTTCAGGTGGACCATGCCAAGTCTCTACAC
TACATCGGAACTGGTGTGGCCTTCACTGCTGGGCTGCTCTTTGTGTGCCTGCACTGTGTTCTCTTCTACC
ATGGGGCCACCACCCCCCTGGACATGGCTATGGCCTACCTTCGAAGTGTGCTGGCTGTCATCGCCTTCAT
CACCCTGGTCCTTAGTGGAGTCTTCTTCCTCCACGAGAGTTCTCAGCTCCAGCATGGAGCTGCTCTGTGT
GAATGGGTGTTTGTCCTCGATATCCTCATTTTCTATGGCACCTTCAGCTATGAGTTCGGGACAATCTCCT
CAGACACACTGGTGGCCGCACTACAGCCTGCCCCGGGCAGGGCCTGTAAGTCCTCTGGGAGCAGCAGCAC
CTCTACCCACCTCAACTGTGCTCCCGAGAGTATTGCCATGATCTGA

Translation (271 aa):
MTAWILLPVSLSAFSITGIWTVYAMAVMNRHVCPVENWSYNESCSPDPAEQGGPKSCCTLDDVPLISKCG
TYPPESCLFSLIGNMGAVMVALICLLRYGQLLEQSRHSWINTTALITGCTNAAGLVVVGNFQVDHAKSLH
YIGTGVAFTAGLLFVCLHCVLFYHGATTPLDMAMAYLRSVLAVIAFITLVLSGVFFLHESSQLQHGAALC
EWVFVLDILIFYGTFSYEFGTISSDTLVAALQPAPGRACKSSGSSSTSTHLNCAPESIAMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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