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Report for CCDS46962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46962.1 Public Homo sapiens 3 ZMAT3 24 110 108 CCDS HistoryNCBI Gene:64393Re-query CCDS DB by CCDS ID:46962.1Re-query CCDS DB by GeneID:64393See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432729.5 ENSP00000396506.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432729.5Link to Ensembl Protein Viewer:ENSP00000396506.1Re-query CCDS DB by Nucleotide ID:ENST00000432729Re-query CCDS DB by Protein ID:ENSP00000396506
Original member Current member NCBI NM_001375826.1 NP_001362755.1 Accepted alive Link to Nucleotide Sequence:NM_001375826.1Link to Protein Sequence:NP_001362755.1Re-query CCDS DB by Nucleotide ID:NM_001375826Re-query CCDS DB by Protein ID:NP_001362755Link to BLAST:NP_001362755.1
Original member Current member NCBI NM_001375827.1 NP_001362756.1 Accepted alive Link to Nucleotide Sequence:NM_001375827.1Link to Protein Sequence:NP_001362756.1Re-query CCDS DB by Nucleotide ID:NM_001375827Re-query CCDS DB by Protein ID:NP_001362756Link to BLAST:NP_001362756.1
Original member Current member NCBI NM_001375828.1 NP_001362757.1 Accepted alive Link to Nucleotide Sequence:NM_001375828.1Link to Protein Sequence:NP_001362757.1Re-query CCDS DB by Nucleotide ID:NM_001375828Re-query CCDS DB by Protein ID:NP_001362757Link to BLAST:NP_001362757.1
Original member Current member NCBI NM_001375829.1 NP_001362758.1 Accepted alive Link to Nucleotide Sequence:NM_001375829.1Link to Protein Sequence:NP_001362758.1Re-query CCDS DB by Nucleotide ID:NM_001375829Re-query CCDS DB by Protein ID:NP_001362758Link to BLAST:NP_001362758.1
Original member Current member NCBI NM_152240.3 NP_689426.1 Accepted alive Link to Nucleotide Sequence:NM_152240.3Link to Protein Sequence:NP_689426.1Re-query CCDS DB by Nucleotide ID:NM_152240Re-query CCDS DB by Protein ID:NP_689426Link to BLAST:NP_689426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362755.1 288 Q9HA38-2 288 100% 0 0
NP_001362756.1 288 Q9HA38-2 288 100% 0 0
NP_001362757.1 288 Q9HA38-2 288 100% 0 0
NP_001362758.1 288 Q9HA38-2 288 100% 0 0
NP_689426.1 288 Q9HA38-2 288 100% 0 0

Chromosomal Locations for CCDS 46962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179025017 179025225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179027423 179027523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179027646 179027812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179030880 179030999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179067483 179067752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGATCCTCTTGCAACACGCCGTGCTTCCTCCACCTAAGCAGCCCTCACCCTCGCCTCCTATGTCAGTGG
CCACCAGGTCTACAGGAACCTTGCAGCTTCCACCACAGAAGCCTTTTGGGCAGGAGGCTTCCTTGCCTCT
TGCAGGGGAAGAAGAGTTATCGAAGGGAGGGGAGCAAGACTGTGCCCTGGAGGAGCTATGTAAGCCCCTG
TACTGCAAACTCTGCAATGTCACCTTGAACTCTGCACAGCAAGCCCAGGCTCATTATCAGGGTAAAAATC
ATGGTAAGAAACTCCGAAATTACTATGCAGCAAATAGCTGTCCTCCTCCTGCTAGAATGAGCAATGTGGT
CGAGCCTGCAGCTACTCCAGTTGTTCCAGTCCCTCCGCAGATGGGCTCCTTTAAGCCAGGAGGCCGAGTG
ATCCTGGCCACGGAGAATGATTACTGTAAGCTCTGTGATGCCTCCTTCAGTTCCCCAGCTGTGGCTCAGG
CTCACTATCAAGGGAAGAATCATGCCAAGAGGCTGCGGCTGGCGGAAGCTCAGAGTAACTCATTCTCGGA
ATCCTCAGAGCTGGGTCAACGGCGGGCCAGGAAAGAAGGGAATGAGTTTAAGATGATGCCTAACAGGAGA
AATATGTATACAGTACAGAATAATTCAGGTCCTTACTTCAATCCCCGCTCTCGGCAGAGAATTCCACGTG
ATCTGGCCATGTGTGTTACTCCAAGTGGCCAGTTTTACTGCTCAATGTGTAATGTTGGAGCTGGCGAAGA
GATGGAATTCCGGCAGCATTTAGAGAGCAAGCAACATAAGAGCAAGGTGTCTGAACAGCGGTACAGGAAT
GAGATGGAGAATCTGGGATATGTATAG

Translation (288 aa):
MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQDCALEELCKPL
YCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPPQMGSFKPGGRV
ILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSNSFSESSELGQRRARKEGNEFKMMPNRR
NMYTVQNNSGPYFNPRSRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRN
EMENLGYV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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