NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
636.1 Public Homo sapiens 1 SLC35D1 24 110 108 CCDS HistoryNCBI Gene:23169Re-query CCDS DB by CCDS ID:636.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 636.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235345.6 ENSP00000235345.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235345.6Link to Ensembl Protein Viewer:ENSP00000235345.5Re-query CCDS DB by Nucleotide ID:ENST00000235345Re-query CCDS DB by Protein ID:ENSP00000235345
Original member Current member NCBI NM_015139.3 NP_055954.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015139.3Link to Protein Sequence:NP_055954.1Re-query CCDS DB by Nucleotide ID:NM_015139Re-query CCDS DB by Protein ID:NP_055954Link to BLAST:NP_055954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055954.1 355 Q9NTN3-1 355 100% 0 0

Chromosomal Locations for CCDS 636.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 67004340 67004448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67009085 67009167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67020369 67020447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67021535 67021602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67042236 67042328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67047265 67047367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67049782 67049850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67050433 67050504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67052012 67052079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67052771 67052857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67052956 67052989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67053811 67054013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGCGGAAGTTCATAGACGTCAGCATGCTCGGGTTAAAGGAGAAGCCCCCGCGAAATCCTCCACACTCC
GAGATGAGGAGGAGCTGGGGATGGCGTCGGCCGAAACGCTGACCGTGTTTCTGAAGCTGCTGGCCGCCGG
CTTTTACGGCGTGAGCTCCTTCCTGATCGTGGTGGTGAATAAGAGCGTGCTCACCAATTACAGATTTCCC
TCCTCACTATGTGTTGGACTTGGCCAGATGGTGGCCACAGTGGCAGTTCTCTGGGTGGGAAAGGCGCTCA
GAGTAGTCAAGTTTCCTGACCTTGACAGAAATGTACCTCGAAAGACGTTTCCACTACCTCTACTATATTT
TGGGAACCAAATCACGGGACTGTTCAGCACAAAGAAACTGAACTTGCCAATGTTTACAGTTCTGAGAAGG
TTCTCCATCCTGTTTACAATGTTTGCTGAAGGAGTTTTACTCAAGAAGACTTTTTCTTGGGGTATTAAAA
TGACTGTATTTGCAATGATTATTGGAGCCTTTGTAGCTGCCAGCTCTGACTTGGCATTTGATCTGGAAGG
ATATGCTTTTATTCTGATAAACGATGTCCTAACAGCAGCAAATGGTGCATACGTAAAACAAAAATTAGAT
TCAAAAGAGCTGGGAAAATATGGACTGCTCTATTACAATGCACTGTTCATGATTCTGCCCACCCTGGCCA
TTGCGTATTTCACAGGAGATGCACAAAAGGCTGTGGAGTTTGAAGGCTGGGCTGACACCCTCTTTCTTCT
GCAGTTCACCCTCTCCTGTGTGATGGGGTTTATCTTAATGTACGCCACAGTACTCTGCACGCAGTATAAT
TCTGCTCTTACAACTACAATAGTTGGCTGTATTAAGAATATATTAATAACTTATATTGGAATGGTCTTTG
GTGGAGATTATATTTTCACGTGGACAAACTTCATTGGTTTAAATATCAGCATTGCTGGGAGCCTGGTATA
TTCCTATATCACTTTCACTGAAGAGCAGCTGAGCAAACAGTCAGAGGCTAATAACAAGCTGGACATTAAG
GGGAAAGGAGCAGTGTGA

Translation (355 aa):
MAEVHRRQHARVKGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFP
SSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRR
FSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLD
SKELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYN
SALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEANNKLDIK
GKGAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH