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Report for CCDS51528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51528.1 Public Mus musculus 5 Polr2b 23 108 98 CCDS HistoryNCBI Gene:231329Re-query CCDS DB by CCDS ID:51528.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031167.5 ENSMUSP00000031167.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031167.5Link to Ensembl Protein Viewer:ENSMUSP00000031167.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031167Re-query CCDS DB by Protein ID:ENSMUSP00000031167
Original member Current member NCBI NM_153798.2 NP_722493.2 Accepted alive Link to Nucleotide Sequence:NM_153798.2Link to Protein Sequence:NP_722493.2Re-query CCDS DB by Nucleotide ID:NM_153798Re-query CCDS DB by Protein ID:NP_722493Link to BLAST:NP_722493.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722493.2 1174 Q8CFI7 1174 100% 0 0

Chromosomal Locations for CCDS 51528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77310612 77310630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77313151 77313223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77315850 77316000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77319964 77320076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77320211 77320430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77320955 77321113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77323554 77323718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77325739 77325935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77326048 77326167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77326535 77326721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77331133 77331276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77331950 77332089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77332187 77332298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77334417 77334571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77335634 77335832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77336427 77336595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77339321 77339417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77340375 77340469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77342530 77342780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77342861 77342950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77343170 77343277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77344792 77344905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77345251 77345411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77348223 77348418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77349080 77349169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGTATGACGCCGACGAGGACATGCAATATGATGAAGACGACGATGAGATCACTCCGGATCTGTGGCAGG
AAGCATGCTGGATCGTGATCAGTTCTTACTTTGATGAGAAAGGCTTGGTCAGACAACAGCTGGATTCCTT
TGATGAGTTTATTCAGATGTCTGTTCAAAGAATTGTGGAAGATGCACCACCGATTGACCTACAGGCCGAA
GCTCAGCACGCCAGTGGAGAAGTTGAAGAGCCGCCAAGATATTTACTGAAGTTTGAACAAATTTACCTCT
CCAAACCTACTCATTGGGAAAGAGATGGTGCCCCTTCGCCAATGATGCCAAATGAAGCCAGGTTAAGAAA
TCTCACGTATTCTGCTCCGCTTTACGTTGACATAACAAAGACAGTCATTAAAGAAGGTGAAGAACAGCTG
CAGACTCAGCACCAGAAAACGTTCATAGGGAAAATTCCAATTATGCTGCGCTCCACCTACTGCCTGTTAA
ATGGCTTAACAGATCGTGACCTGTGTGAGCTGAATGAGTGTCCTTTGGATCCCGGTGGCTATTTTATTAT
CAATGGATCAGAAAAGGTTCTGATAGCTCAAGAGAAAATGGCAACAAACACAGTCTATGTGTTTGCCAAA
AAGGATTCCAAGTATGCCTATACAGGAGAATGTCGCTCATGCCTGGAGAATTCTTCCCGACCCACCAGTA
CTATATGGGTTAGCATGCTGGCCAGAGGAGGACAGGGTGCAAAGAAGAGTGCTATTGGCCAGCGCATCGT
GGCAACGTTACCATACATCAAGCAAGAAGTTCCTATCATCATTGTGTTCAGAGCACTAGGCTTTGTGTCT
GATAGAGATATTTTAGAACACATCATTTATGACTTCGAGGATCCAGAGATGATGGAAATGGTTAAACCAT
CTCTCGATGAAGCGTTTGTCATCCAAGAGCAGAATGTTGCCTTAAACTTCATCGGTTCAAGAGGGGCAAA
GCCTGGTGTTACTAAGGAGAAAAGAATTAAATATGCAAAAGAAGTCTTACAGAAAGAAATGCTCCCTCAC
GTTGGTGTCAGTGATTTCTGTGAGACCAAAAAGGCCTATTTCTTGGGGTATATGGTTCATAGGTTGCTTC
TAGCAGCCCTAGGCAGAAGAGAACTAGACGACAGAGATCACTATGGCAACAAGAGATTGGATCTTGCTGG
GCCTCTGCTTGCATTCTTATTCAGAGGCATGTTTAAGAATTTGCTGAAAGAAGTACGAATCTATGCGCAG
AAGTTTATTGATCGCGGGAAGGATTTTAACTTAGAGCTGGCAATCAAGACAAGGATCATATCTGATGGGC
TAAAATACTCTTTAGCCACTGGGAACTGGGGTGACCAGAAGAAAGCTCATCAAGCCAGAGCTGGAGTATC
CCAGGTATTGAACCGCCTGACGTTTGCATCTACTCTTTCTCACCTGCGTCGTCTAAACTCTCCTATTGGC
AGAGATGGCAAGCTAGCGAAGCCCAGACAGTTGCATAATACCTTGTGGGGAATGGTGTGTCCTGCTGAAA
CTCCAGAGGGCCATGCTGTAGGGCTTGTGAAGAATTTAGCCCTGATGGCTTATATTTCAGTTGGATCTCA
ACCCTCTCCAATTTTGGAATTTTTAGAAGAATGGAGCATGGAAAATTTAGAAGAAATTTCTCCTGCAGCT
ATTGCTGATGCAACCAAGATTTTTGTTAATGGCTGCTGGGTTGGAATCCATAAAGACCCCGAACAACTCA
TGAACACGCTAAGGAAGTTACGGCGGCAGATGGACATCATTGTATCCGAAGTTTCTATGATCAGAGATAT
TCGAGAGCGGGAGATTCGGATCTATACAGATGCAGGCCGTATTTGTAGACCCCTTCTGATTGTGGAAAAG
CAGAAGCTGCTTTTGAAGAAGAGACACATTGACCAGTTGAAAGAGAGAGAATATAACAACTACAGTTGGC
AGGATCTGGTAGCCAGTGGGGTAGTAGAGTATATTGATACCCTGGAAGAGGAGACCGTGATGCTTGCAAT
GACTCCAGATGATTTGCAGGAGAAGGAAGTAGCTTATTGTTCTACCTACACCCACTGTGAGATTCACCCA
TCAATGATTCTTGGAGTCTGTGCATCTATTATTCCTTTTCCTGATCATAACCAGTCCCCTAGAAACACAT
ACCAGTCTGCTATGGGCAAGCAGGCTATGGGAGTTTATATCACCAACTTCCATGTGCGGATGGACACCTT
GGCCCATGTTCTCTACTATCCTCAGAAACCCCTTGTGACTACACGGTCTATGGAATATCTACGATTCAGA
GAGCTGCCAGCAGGAATCAACTCAATTGTGGCCATTGCATCCTACACGGGCTATAATCAAGAAGACTCTG
TTATCATGAATCGTTCAGCTGTGGATCGAGGCTTTTTCAGGTCTGTTTTCTACCGATCATACAAAGAACA
AGAGTCTAAAAAGGGATTTGATCAAGAAGAAGTGTTTGAGAAGCCTACACGTGAGACATGCCAGGGAATG
AGGCATGCCATCTATGAAAAGTTGGACGATGACGGTTTGATAGCTCCGGGGGTCCGAGTCTCCGGAGATG
ACGTTATTATCGGCAAGACAGTCACCTTACCCGAGAACGAGGATGAGCTGGAGAGCACCAACAGGCGCTA
CACCAAGAGGGACTGCAGCACTTTCCTCAGAACTAGTGAGACGGGCATCGTGGACCAGGTCATGGTCACT
CTCAACCAGGAAGGATATAAATTTTGTAAAATAAGGGTGCGCTCTGTTAGAATTCCGCAGATTGGAGACA
AATTTGCTAGCCGACATGGTCAGAAGGGAACTTGTGGTATTCAGTATAGACAAGAGGACATGCCGTTCAC
TTGCGAAGGCATAACTCCTGACATCATCATAAACCCCCACGCCATCCCCTCCCGGATGACAATTGGTCAC
TTGATCGAATGTCTCCAAGGGAAGGTCTCTGCCAACAAGGGTGAAATTGGTGACGCTACTCCATTTAATG
ATGCTGTCAATGTGCAGAAGATTTCTAATCTTTTGTCTGACTATGGCTACCATCTCAGAGGGAACGAGGT
GCTCTACAATGGATTCACTGGACGAAAAATCACATCACAGATTTTTATTGGCCCCACTTACTACCAGCGT
TTGAAGCATATGGTGGATGACAAAATTCATTCTCGTGCTAGGGGACCCATTCAGATTCTTAACAGACAGC
CCATGGAGGGCAGATCTCGTGATGGTGGCCTGCGCTTCGGAGAAATGGAACGAGACTGTCAAATTGCCCA
CGGTGCAGCACAGTTTCTAAGAGAAAGACTGTTTGAAGCATCAGATCCGTATCAGGTTCATGTCTGTAAT
CTTTGTGGAATAATGGCAATTGCTAACACGAGGACTCATACATATGAGTGCAGGGGATGCCGCAATAAAA
CCCAGATTTCCTTGGTGCGAATGCCGTACGCGTGCAAGCTGTTGTTCCAGGAGCTCATGTCCATGAGCAT
CGCACCACGAATGATGAGTGTTTAG

Translation (1174 aa):
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE
AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL
QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK
KDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVS
DRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPH
VGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIG
RDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA
IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK
QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHP
SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFR
ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVT
LNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGH
LIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQR
LKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCN
LCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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