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Report for CCDS18656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18656.1 Public Mus musculus 4 5730409E04Rik 23 108 98 CCDS HistoryNCBI Gene:230757Re-query CCDS DB by CCDS ID:18656.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097886.3 ENSMUSP00000095496.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097886.3Link to Ensembl Protein Viewer:ENSMUSP00000095496.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097886Re-query CCDS DB by Protein ID:ENSMUSP00000095496
Original member Current member EBI ENSMUST00000164362.1 ENSMUSP00000128538.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164362.1Link to Ensembl Protein Viewer:ENSMUSP00000128538.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164362Re-query CCDS DB by Protein ID:ENSMUSP00000128538
Original member NCBI NM_001013755.3 NP_001013777.2 Updated not alive Link to Nucleotide Sequence:NM_001013755.3Link to Protein Sequence:NP_001013777.2Re-query CCDS DB by Nucleotide ID:NM_001013755Re-query CCDS DB by Protein ID:NP_001013777
Current member NCBI NM_001013755.4 NP_001013777.2 Accepted alive Link to Nucleotide Sequence:NM_001013755.4Link to Protein Sequence:NP_001013777.2Re-query CCDS DB by Nucleotide ID:NM_001013755Re-query CCDS DB by Protein ID:NP_001013777Link to BLAST:NP_001013777.2
Original member NCBI NM_001145950.1 NP_001139422.1 Updated not alive Link to Nucleotide Sequence:NM_001145950.1Link to Protein Sequence:NP_001139422.1Re-query CCDS DB by Nucleotide ID:NM_001145950Re-query CCDS DB by Protein ID:NP_001139422
Current member NCBI NM_001145950.2 NP_001139422.1 Accepted alive Link to Nucleotide Sequence:NM_001145950.2Link to Protein Sequence:NP_001139422.1Re-query CCDS DB by Nucleotide ID:NM_001145950Re-query CCDS DB by Protein ID:NP_001139422Link to BLAST:NP_001139422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013777.2 230 Q8BP99 230 100% 0 0
NP_001139422.1 230 Q8BP99 230 100% 0 0

Chromosomal Locations for CCDS 18656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126611681 126612373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGTTCGCTGCCATCCAGCCAGGACTAGCAGAGGGGGCCCAGTACCCAGGGAGCCTGCCTCCTGGAGTAT
GCCAACCAGACCTCCAACCAGACAATAACTCCAACTTTGTGGAGAGTGCTAAGGATGCCAATAAGAACTG
GCATGGTGTGCCAGGCAAAGTGGATCCTATTCTGATAAGGAGCTCCTCTGAGTCACCCTCTGATAACCAG
GTCTTCCAAGCCACCAGGCTCCCTGAGGCCGGAGTCCGCAGTCCCCCGGAGGGTGCGGAGATCCCTGGTG
CTGAGCCAGAGAAGTTGAGCGGTGCCAGCAGTGTCTGCTCTCCTCTGGAGGACATTGGCTATGCCAGCAG
TTCCTTGAGCATCGACAGCTTCAGCAGCAGTCCAGAACCTGTCTGCGATACCCCTCGAGGTCCGAGCCCT
CTGGATCCCCTTCTGCCCTCCGTGGCCCAGGCCGTGCAGCAGCTGCAGGCTCAGGAGCGCTACAAAGAAC
AGGAGAAGGAGAAACACCACGCGCATTTGGTGATGTATCGGCGCTTGGCGCTGCTCCAGTGGATCCGGGC
TCTGCAGCACCAGTTGGTCGACCAGCAGGCCCGACTGCAAGAGAGCTTTGACACCATCCTGGACAACCGG
AAGGAGCTTATCCGCTGTCTGCAACAGAGGGAAGCACCTTGCAGGCACCAGGACCAGGGCTAA

Translation (230 aa):
MFAAIQPGLAEGAQYPGSLPPGVCQPDLQPDNNSNFVESAKDANKNWHGVPGKVDPILIRSSSESPSDNQ
VFQATRLPEAGVRSPPEGAEIPGAEPEKLSGASSVCSPLEDIGYASSSLSIDSFSSSPEPVCDTPRGPSP
LDPLLPSVAQAVQQLQAQERYKEQEKEKHHAHLVMYRRLALLQWIRALQHQLVDQQARLQESFDTILDNR
KELIRCLQQREAPCRHQDQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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