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Report for CCDS18176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18176.1 Public Mus musculus 4 Aldob 23 108 98 CCDS HistoryNCBI Gene:230163Re-query CCDS DB by CCDS ID:18176.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029987.9 ENSMUSP00000029987.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029987.9Link to Ensembl Protein Viewer:ENSMUSP00000029987.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029987Re-query CCDS DB by Protein ID:ENSMUSP00000029987
Original member Current member NCBI NM_144903.3 NP_659152.1 Accepted alive Link to Nucleotide Sequence:NM_144903.3Link to Protein Sequence:NP_659152.1Re-query CCDS DB by Nucleotide ID:NM_144903Re-query CCDS DB by Protein ID:NP_659152Link to BLAST:NP_659152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659152.1 364 Q91Y97 364 100% 0 0

Chromosomal Locations for CCDS 18176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49536793 49536888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49538128 49538327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49538718 49538892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49539713 49539796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49541131 49541291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49542794 49542848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49543657 49543868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49544797 49544908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGCTCACCGATTTCCAGCCCTCACCCCAGAGCAGAAGAAGGAGCTCTCTGAAATTGCCCAGCGCATTG
TTGCCAATGGGAAGGGCATCCTGGCTGCAGATGAATCTGTGGGTACCATGGGAAACCGCCTGCAAAGGAT
AAAGGTGGAGAACACCGAAGAGAACCGAAGGCAGTTCCGAGAACTCCTCTTTAGTGTGGACAATTCCATT
AGCCAGAGCATCGGCGGAGTGATCCTTTTCCACGAGACCCTCTACCAGAAGGACAGCCAGGGAAATCTGT
TCAGAAACGTTCTCAAGGAGAAGGGAATTGTGGTGGGCATCAAGTTGGACCAAGGAGGTGCCCCGCTTGC
AGGAACAAACAAGGAAACCACCATTCAAGGGCTTGATGGCCTCTCTGAACGCTGTGCTCAGTACAAGAAA
GATGGAGTTGACTTTGGGAAGTGGCGTGCTGTGTTGAGGATTGCTGACCAGTGTCCTTCCAGCCTTGCTA
TCCAAGAAAATGCCAATGCTCTGGCTCGCTATGCCAGCATCTGTCAGCAGAATGGGCTGGTCCCTATTGT
TGAGCCAGAGGTGCTTCCTGACGGAGACCATGACCTGGAGCACTGCCAGTATGTTTCTGAGAAGGTCCTG
GCTGCTGTCTACAAGGCTCTCAATGATCATCATGTTTACCTAGAAGGCACCTTGCTAAAGCCAAACATGG
TGACTGCTGGACATGCCTGCACGAAGAAGTATACACCAGAGCAGGTGGCTATGGCCACTGTCACAGCTCT
CCACAGAACTGTTCCTGCAGCTGTTCCTGGTATCTGCTTTTTGTCTGGAGGTATGAGTGAGGAGGATGCT
ACACTTAACCTCAATGCTATCAACCGTTGCCCTCTACCAAGGCCCTGGAAACTAAGCTTTTCATATGGAA
GAGCCCTCCAGGCCAGTGCATTGGCTGCCTGGGGTGGCAAGGCTGCAAACAAGAAGGCAACCCAGGAAGC
TTTCATGAAGCGGGCTATGGCTAACTGCCAGGCGGCCCAAGGACAGTACGTTCACACAGGCTCTTCAGGT
GCTGCTGCCACCCAGTCGCTCTTCACAGCCTCCTACACCTATTAG

Translation (364 aa):
MAHRFPALTPEQKKELSEIAQRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFRELLFSVDNSI
SQSIGGVILFHETLYQKDSQGNLFRNVLKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKK
DGVDFGKWRAVLRIADQCPSSLAIQENANALARYASICQQNGLVPIVEPEVLPDGDHDLEHCQYVSEKVL
AAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDA
TLNLNAINRCPLPRPWKLSFSYGRALQASALAAWGGKAANKKATQEAFMKRAMANCQAAQGQYVHTGSSG
AAATQSLFTASYTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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