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Report for CCDS2725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2725.1 Public Homo sapiens 3 EXOSC7 24 110 108 CCDS HistoryNCBI Gene:23016Re-query CCDS DB by CCDS ID:2725.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265564.8 ENSP00000265564.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265564.8Link to Ensembl Protein Viewer:ENSP00000265564.7Re-query CCDS DB by Nucleotide ID:ENST00000265564Re-query CCDS DB by Protein ID:ENSP00000265564
Original member Current member NCBI NM_015004.4 NP_055819.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015004.4Link to Protein Sequence:NP_055819.2Re-query CCDS DB by Nucleotide ID:NM_015004Re-query CCDS DB by Protein ID:NP_055819Link to BLAST:NP_055819.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055819.2 291 Q15024 291 100% 0 0

Chromosomal Locations for CCDS 2725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44976278 44976334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44989140 44989241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44989550 44989644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44997087 44997252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45001538 45001608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45005291 45005414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45007420 45007575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45011235 45011339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCGTCCGTGACGCTGAGCGAGGCGGAGAAGGTGTACATCGTGCATGGCGTCCAGGAAGACCTCCGTG
TGGATGGCCGTGGCTGTGAGGACTACCGATGTGTCGAAGTGGAAACTGATGTGGTGTCCAACACTAGTGG
GTCCGCCAGGGTCAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACGCCGAAG
CTGGAGAAACCAAATGAAGGCTACTTGGAGTTCTTTGTTGACTGTTCAGCCAGTGCTACCCCTGAATTTG
AAGGTAGAGGAGGTGATGACCTTGGCACCGAGATCGCTAACACCCTCTATCGGATATTTAACAATAAAAG
CAGTGTCGACTTAAAGACCCTCTGCATTAGTCCTCGGGAGCACTGCTGGGTTCTCTATGTGGATGTGCTG
CTTCTGGAATGTGGTGGAAATTTGTTTGATGCCATTTCCATTGCTGTAAAGGCTGCTCTCTTCAATACAA
GGATACCAAGGGTTCGAGTTTTGGAGGATGAAGAGGGGTCGAAGGACATTGAATTGTCAGATGACCCTTA
TGACTGCATACGACTAAGTGTGGAGAATGTCCCCTGCATTGTCACTCTGTGCAAGATTGGCTATCGGCAT
GTGGTGGATGCTACTCTTCAGGAGGAGGCCTGCTCGCTGGCCAGCTTGCTGGTGTCGGTGACCAGCAAGG
GAGTTGTGACGTGCATGAGGAAAGTGGGGAAGGGCAGCCTGGACCCAGAGAGCATCTTCGAGATGATGGA
GACTGGCAAGCGTGTGGGCAAGGTACTGCATGCCTCCTTGCAGAGTGTTGTGCACAAGGAAGAAAGCCTG
GGGCCCAAGAGACAGAAAGTTGGATTCCTGGGATGA

Translation (291 aa):
MASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK
LEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL
LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRH
VVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEESL
GPKRQKVGFLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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