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Report for CCDS38593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38593.1 Public Mus musculus 3 Ahcyl1 23 108 98 CCDS HistoryNCBI Gene:229709Re-query CCDS DB by CCDS ID:38593.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029490.14 ENSMUSP00000029490.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029490.14Link to Ensembl Protein Viewer:ENSMUSP00000029490.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029490Re-query CCDS DB by Protein ID:ENSMUSP00000029490
Original member Current member NCBI NM_145542.4 NP_663517.2 Accepted alive Link to Nucleotide Sequence:NM_145542.4Link to Protein Sequence:NP_663517.2Re-query CCDS DB by Nucleotide ID:NM_145542Re-query CCDS DB by Protein ID:NP_663517Link to BLAST:NP_663517.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663517.2 530 Q80SW1 530 100% 0 0

Chromosomal Locations for CCDS 38593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107665107 107665113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107665516 107665636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107667142 107667220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107667640 107667708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107668067 107668165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107668250 107668344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107668667 107668737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107669093 107669181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107669892 107669955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107670204 107670320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107671138 107671244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107672042 107672136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107673436 107673538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107674008 107674108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107675011 107675154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107677720 107677831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107696158 107696277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGTCGATGCCTGACGCGATGCCGCTGCCCGGTGTCGGGGAGGAGCTGAAACAGGCCAAGGAGATCGAGG
ACGCCGAGAAGTACTCCTTCATGGCCACGGTCACCAAGGCTCCCAAGAAGCAAATCCAGTTTGCTGATGA
CATGCAAGAGTTCACCAAATTCCCTACTAAGACTGGCCGGAGATCTTTGTCTCGTTCCATCTCACAATCC
TCCACAGACAGCTACAGTTCAGCTGCATCCTATACAGATAGCTCTGATGATGAGGTTTCCCCTCGAGAGA
AGCAGCAAACCAACTCGAAGGGCAGCAGCAATTTCTGTGTGAAGAACATCAAGCAGGCAGAGTTTGGACG
CCGGGAGATTGAGATTGCAGAGCAAGACATGTCTGCTCTGATTTCACTCAGGAAACGTGCTCAGGGAGAG
AAGCCTTTGGCTGGTGCTAAAATAGTGGGCTGTACGCACATCACGGCCCAGACAGCGGTATTAATTGAGA
CCCTTTGTGCCCTGGGAGCTCAGTGCCGCTGGTCTGCCTGCAACATCTATTCAACTCAGAATGAAGTAGC
TGCAGCACTGGCTGAGGCTGGAGTCGCGGTGTTTGCTTGGAAGGGCGAGTCAGAAGATGATTTCTGGTGG
TGCATTGACCGCTGTGTCAACATGGATGGGTGGCAGGCTAACATGATCCTGGATGATGGGGGAGACTTAA
CCCACTGGGTTTATAAGAAGTATCCAAACGTGTTTAAGAAGATCCGAGGCATTGTGGAAGAGAGCGTGAC
TGGTGTTCACAGGCTGTATCAGCTCTCCAAAGCTGGGAAGCTCTGTGTTCCAGCCATGAATGTCAATGAT
TCTGTTACCAAACAGAAGTTTGATAACCTGTACTGCTGCCGAGAATCCATTTTGGATGGCCTGAAGAGGA
CCACGGATGTGATGTTTGGTGGGAAACAGGTGGTGGTGTGTGGCTATGGTGAGGTAGGAAAGGGCTGCTG
TGCTGCTCTCAAGGCCCTTGGAGCAATTGTCTACATAACAGAAATTGACCCCATCTGTGCTCTGCAGGCC
TGCATGGATGGGTTCAGGGTGGTGAAGCTGAATGAAGTCATCCGGCAGGTGGACGTTGTAATTACTTGCA
CAGGAAATAAGAATGTAGTGACTCGGGAGCACTTGGACCGAATGAAAAATAGTTGTATTGTGTGCAATAT
GGGCCATTCCAACACGGAGATCGACGTGACCAGCCTCCGCACTCCAGAACTAACATGGGAGCGTGTACGT
TCTCAGGTGGACCATGTCATCTGGCCTGATGGCAAACGGGTCGTCCTTCTAGCAGAGGGCCGTTTACTTA
ATCTGAGCTGCTCCACAGTCCCTACCTTTGTTCTTTCCATCACGGCTACAACACAGGCTTTGGCACTGAT
AGAGCTTTACAACGCCCCGGAGGGACGCTACAAACAGGATGTGTACTTGCTTCCTAAGAAGATGGATGAA
TATGTTGCCAGCTTGCACTTACCATCATTTGATGCCCACCTGACAGAACTGACAGATGACCAAGCAAAGT
ATCTGGGACTCAACAAAAATGGGCCATTCAAACCTAATTATTACAGATACTAA

Translation (530 aa):
MSMPDAMPLPGVGEELKQAKEIEDAEKYSFMATVTKAPKKQIQFADDMQEFTKFPTKTGRRSLSRSISQS
STDSYSSAASYTDSSDDEVSPREKQQTNSKGSSNFCVKNIKQAEFGRREIEIAEQDMSALISLRKRAQGE
KPLAGAKIVGCTHITAQTAVLIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWW
CIDRCVNMDGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVND
SVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQA
CMDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR
SQVDHVIWPDGKRVVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDE
YVASLHLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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