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Report for CCDS19754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19754.1 Public Mus musculus 5 Prkrip1 23 108 98 CCDS HistoryNCBI Gene:66801Re-query CCDS DB by CCDS ID:19754.1Re-query CCDS DB by GeneID:66801See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151786.7 ENSMUSP00000120659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151786.7Link to Ensembl Protein Viewer:ENSMUSP00000120659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151786Re-query CCDS DB by Protein ID:ENSMUSP00000120659
Original member Current member NCBI NM_025774.3 NP_080050.1 Accepted alive Link to Nucleotide Sequence:NM_025774.3Link to Protein Sequence:NP_080050.1Re-query CCDS DB by Nucleotide ID:NM_025774Re-query CCDS DB by Protein ID:NP_080050Link to BLAST:NP_080050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080050.1 186 Q9CWV6 186 100% 0 0

Chromosomal Locations for CCDS 19754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136181396 136181496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136189552 136189619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136191900 136191985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136194297 136194397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136197780 136197858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136198775 136198900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCGAGTCCTGCTGCCGCTTCTGTGAGACCGCCCAGGCCCAAGAAAGAGCCGCAGACGCTGGTCATCC
CCAAGAATGCGGCCGAGGAGCAGAAGCTCAAGCTGGAGCGGCTCATGAAGAACCCGGACAAAGCAGTTCC
AATTCCAGAGAAAATGAATGAATGGGCTCCTCGAGCGCCTCCAGAATTTGTCCGAGATGTCATGGGTTCC
AGTGCTGGGGCTGGCAGTGGAGAGTTCCACGTGTATAGGCACCTACGGCGGAGAGAGTACCAGCGGCAGG
ACTACATGGATGCCATGGCTGAGAAGCAAAAACTGGATGCAGAGTTTCAGAAGAGACTAGAAAAGAATAA
AATTGCTGCAGAGGAGCAGACTGCAAAGCGCCGGAAAAAGCGCCAGAAGTTAAAAGAGAAGAAGTTACTG
GCAAAGAAGATGAAACTTGAACAGAAGAAACAGAAGGAAGAACCCAGTCAGTGCCAGGAACAGCATGCCA
GCAGCTCTGACGAGGCATCTGAAACAGAGGAGGAGGAAGAGGAGCCCAGCGTCGTCATCATGGGGCGATG
A

Translation (186 aa):
MASPAAASVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMNEWAPRAPPEFVRDVMGS
SAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLL
AKKMKLEQKKQKEEPSQCQEQHASSSDEASETEEEEEEPSVVIMGR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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