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Report for CCDS17383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17383.1 Public Mus musculus 3 Gmps 23 108 98 CCDS HistoryNCBI Gene:229363Re-query CCDS DB by CCDS ID:17383.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029405.7 ENSMUSP00000029405.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029405.7Link to Ensembl Protein Viewer:ENSMUSP00000029405.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029405Re-query CCDS DB by Protein ID:ENSMUSP00000029405
Original member Current member NCBI NM_001033300.2 NP_001028472.2 Accepted alive Link to Nucleotide Sequence:NM_001033300.2Link to Protein Sequence:NP_001028472.2Re-query CCDS DB by Nucleotide ID:NM_001033300Re-query CCDS DB by Protein ID:NP_001028472Link to BLAST:NP_001028472.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028472.2 693 Q3THK7 693 100% 0 0

Chromosomal Locations for CCDS 17383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63976284 63976310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63980136 63980317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63982411 63982525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63985600 63985697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63987659 63987762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63990155 63990348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63990517 63990682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63993191 63993342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63993800 63993973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63996807 63996912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63998602 63998717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64001513 64001638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64011557 64011672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64014254 64014384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64015425 64015597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64016633 64016734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGGCCCTGTGCAACGGAGATTCCAAGCCGGAGAATGCTGGAGGAGATCTTAAGGATGGTTCTCACCATT
ACGAAGGAGCTGTTGTCATTCTGGATGCTGGAGCCCAGTATGGGAAAGTCATTGACCGAAGAGTGCGGGA
GCTCTTTGTGCAGTCTGAAATCTTCCCATTGGAAACACCAGCCTTCGCCATAAAGGAACAAGGATTTCGG
GCTATTATCATATCTGGAGGACCTAATTCTGTGTATGCAGAGGATGCTCCCTGGTTTGATCCAGCAATAT
TTACCATTGGCAAGCCTATTCTAGGAATTTGCTATGGCATGCAGATGATGAATAAAGTCTTTGGAGGCAC
TGTGCATAAAAAAAGTGTTAGAGAGGATGGAGTTTTCAACATTAGTATGGATAATACGTGTTCATTATTC
AGGGGCCTGCAGAAGGAAGAAATTGTTTTACTTACACATGGAGACAGTGTAGACAAAGTTGCTGATGGAT
TCAAGGTTGTAGCACGTTCTGGGAACATTGTGGCAGGTATAGCCAATGAATCTAAAAAGCTATACGGTGT
ACAGTTCCACCCTGAAGTTGGGCTTACAGAAAATGGGAAGGTAATACTGAAGAATTTCCTGTATGATATA
GCTGGATGCAGTGGGAACTTTACTGTGCAGAACCGAGAACTTGAATGCATTCGAGAGATTAAAGAGAAAG
TAGGAACATCAAAAGTGTTGGTTTTACTCAGTGGTGGTGTAGATTCAACTGTTTGTACAGCTTTGCTAAA
TCGTGCTTTGAACCAAGATCAAGTCATTGCTGTACACATTGATAATGGCTTTATGAGAAAACGAGAAAGC
CAATCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCAAGTCAAAGTGATAAATGCTGCTCATTCCTTCT
ACAATGGAACAACTACTCTACCAATCTCAGATGAAGACAGGACCCCACGGAAAAGAATTAGCAAAACATT
AAATATGACAACAAGTCCTGAGGAGAAAAGAAAAATTATTGGTGATACTTTCGTTAAGATTGCCAATGAA
GTAATTGGAGAAATGAGTCTGAAGCCCGAGGAGGTTTTTCTCGCCCAAGGCACTTTACGGCCTGATCTAA
TCGAAAGTGCGTCCCTTGTTGCCAGTGGTAAAGCCGAACTCATCAAAACCCACCACAACGACACAGAACT
TATCAGGAAGTTAAGGGAAGAGGGAAAAGTAATAGAACCTCTGAAAGATTTTCATAAAGATGAAGTCAGG
ATTTTAGGCAGAGAGCTTGACCTGCCAGAAGAATTGGTTTCCAGGCATCCTTTTCCAGGTCCTGGCCTGG
CAATCAGAGTAATATGTGCTGAAGAACCTTATATTTGTAAAGACTTCCCTGAAACCAACAATATTTTGAA
AATAGTAGCTGATTTTTCTGCAAGTGTTAAGAAGCCTCATACACTGTTACAAAGAGTCAAAGCCTGCACA
ACAGAAGAGGACCAGGAGAAGCTCATGCAAATTACAAGTCTGCATTCACTCAATGCTTTCTTGCTGCCAA
TTAAGACTGTAGGTGTACAGGGTGACTGTCGTTCTTACAGTTATGTGTGTGGAATCTCAAGTAAAGATGA
ACCTGACTGGGAATCTCTTATTTTCCTTGCCAGACTTATACCTCGAATGTGTCATAACATTAACAGAGTT
GTCTATATCTTTGGTCCACCAGTTAAAGAGCCTCCTACAGATGTTACTCCAACTTTTTTGACAACAGGAG
TGCTCAGTACTTTACGCCAAGCTGATTTTGAGGCCCATAACATTCTCAGGGAGTCTGGGTTTGCTGGGAA
AATCAGCCAGATGCCAGTGATTTTGACCCCTTTACATTTCGATAGAGATCCACTTCAGAAGCAGCCTTCA
TGCCAGAGGTCTGTGGTTATTCGAACCTTTATTACTAGTGACTTCATGACTGGTGTACCTGCAACACCTG
GCAATGAGATTCCTGTAGAGGTGGTGCTAAAGATGGTCACTGAGATAAAGAAGATTCCTGGAATTTCTAG
AATTATGTATGACCTAACTTCAAAGCCCCCGGGAACCACTGAGTGGGAGTAA

Translation (693 aa):
MALCNGDSKPENAGGDLKDGSHHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFR
AIIISGGPNSVYAEDAPWFDPAIFTIGKPILGICYGMQMMNKVFGGTVHKKSVREDGVFNISMDNTCSLF
RGLQKEEIVLLTHGDSVDKVADGFKVVARSGNIVAGIANESKKLYGVQFHPEVGLTENGKVILKNFLYDI
AGCSGNFTVQNRELECIREIKEKVGTSKVLVLLSGGVDSTVCTALLNRALNQDQVIAVHIDNGFMRKRES
QSVEEALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANE
VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVR
ILGRELDLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKKPHTLLQRVKACT
TEEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPRMCHNINRV
VYIFGPPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILRESGFAGKISQMPVILTPLHFDRDPLQKQPS
CQRSVVIRTFITSDFMTGVPATPGNEIPVEVVLKMVTEIKKIPGISRIMYDLTSKPPGTTEWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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