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Report for CCDS17120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17120.1 Public Mus musculus 2 Zfp217 23 108 98 CCDS HistoryNCBI Gene:228913Re-query CCDS DB by CCDS ID:17120.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063710.12 ENSMUSP00000067334.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063710.12Link to Ensembl Protein Viewer:ENSMUSP00000067334.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063710Re-query CCDS DB by Protein ID:ENSMUSP00000067334
Original member Current member EBI ENSMUST00000109155.7 ENSMUSP00000104783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109155.7Link to Ensembl Protein Viewer:ENSMUSP00000104783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109155Re-query CCDS DB by Protein ID:ENSMUSP00000104783
Original member NCBI NM_001033299.3 NP_001028471.1 Updated not alive Link to Nucleotide Sequence:NM_001033299.3Link to Protein Sequence:NP_001028471.1Re-query CCDS DB by Nucleotide ID:NM_001033299Re-query CCDS DB by Protein ID:NP_001028471
Current member NCBI NM_001033299.4 NP_001028471.1 Accepted alive Link to Nucleotide Sequence:NM_001033299.4Link to Protein Sequence:NP_001028471.1Re-query CCDS DB by Nucleotide ID:NM_001033299Re-query CCDS DB by Protein ID:NP_001028471Link to BLAST:NP_001028471.1
Original member Current member NCBI NM_001159683.1 NP_001153155.1 Accepted alive Link to Nucleotide Sequence:NM_001159683.1Link to Protein Sequence:NP_001153155.1Re-query CCDS DB by Nucleotide ID:NM_001159683Re-query CCDS DB by Protein ID:NP_001153155Link to BLAST:NP_001153155.1

Chromosomal Locations for CCDS 17120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 170112505 170112614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170114061 170115572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170116142 170116258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170119019 170120405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3126 nt):
ATGCCGACCCAGTCCCTCCTCGTGTACATGGACGGGCCGGAAGTCCTCAGCAGCTCTCTAGGCTCCCAGA
TGGAGGTGGATGATGCTGTGCCCATAAAAGGGCCGGTGGCAGTCCCCTTCCGAGCTGCTCAGGAGAAGAG
CATGGCCGTGGCAGAGGGCCACATGCCCCTGGATTGCATGTTCTGCAGCCAGGTCTTCTCTCAGGCGGAG
GATCTCAGTCAGCACGTGCTGCTGCAGCACCGGCCCACCCTCTGCGAGCCAGCTGTCCTGCGTGTGGAGG
CCGAGTACCTAAGTCCCCTTGATAAAGCTCTGGAGCCAACAGAGCCAGCATTGGAGAAGAGTGGCGAAGA
CCCCGAGGAGTTGAGCTGTGATGTGTGTGGGCAGACATTCCCAGTGGCTTTTGATGTTGAGAGCCACATG
AAGAAGCATAAGGACTCCTTCACGTATGGGTGCAGCATGTGCGGGAGGAGATTCAAGGAGCCGTGGTTCC
TGAAGAACCACATGCGGACACACAATGGCAAGTCTGGCACCAGGAGCAAGCTTCAGCAAGGCATGGAGAG
TCCAGTCACCATCAATGAAGTGGTCCAGCCGCACGCCCCTGGGAGCATCTCCACGCCCTACAAGATCTGC
ATGGTCTGCGGCTTCCTCTTCCCAAATAAGCAGAGCCTCATTGAGCACAGCAAGGTTCACGCCAAAGAAA
CTGTCCCCAGTGCCAGCAACGTTGCCCCTGATGACCACCGAGAGGAACCCACGTCCCCGAGGGAAGAGTT
GCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCTGCATACCT
CAGCTTGACCCGTTCACCACCTACCAGGCATGGCAGTTGGCTACCAAAGGAAAAGTGGCCGTTGCCCAGG
AAGAGGTGAAAGAGTCAGGCCAAGAAGGAAGCACAGACAATGACGACTCATGCTCAGAGAAAGAGGAACT
AGGGGAAATATGGGTTGGGGGTAAGGCGGAAGGGTCTGGAAAGTCCAAAACAAGTAAAAGCAGTTGTCCA
GGTCTCTCCCAAGACAAAGAGAAGCCTAGACATGCTAATAGTGAAGTGCCTTCTGGGGATAGTGACCCCA
AGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCA
GCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGACTGATGCCCTGTCACCCACCATGGCTGTG
GATGCAAGGCAGCCTGGGACCTGCTCCCCAGACCTCAGCACCACTCTGGAAGACAGTGGGGCCGGGGACC
GAGAAGGGGGCTCTGAAGACGGGTCTGAGGATGGACTCCCTGACGGGCTCCATTTGGATAAAAATGATGA
TGGAGGAAAAGCGAAGCCCCTCCCGTCCTCGAGAGAGTGTAGTTACTGTGGCAAGTTTTTCCGTTCAAAC
TATTACCTCAATATTCATCTCAGAACGCATACAGGTGAAAAACCATACAAATGTGAATTCTGTGAGTATG
CCGCAGCCCAGAAGACATCTCTGAGGTACCACTTGGAGAGACATCACAAAGACAAGCAGCCGGTGGATGC
TGCCGCTGAGTCCAAAAGTGAAGGCCGGAGCCAGGAGCCGCAGGATGCGCTACTAACGGCTGCTGACAGT
GCGCAGACCAAAAATTTAAAGAGATTTCTTGATGGTGCCAAAGATGTTAAGGGAAGCCCACCTGCCAAGC
AGCTTAAGGAGATGCCTTCTGTCTTCCAGAGTGTTCTCTCACCAGCACACAGCAACGATACTCAGGATTT
CCATAAACATGCAGCTGATAGTGCTGAGAAAGCGAGGAAGAGCCCTGCCCCTACTTATCTGGACATGCAG
AGAAAGAAAGCAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCAGACTAGAGGGGGTTGGGTCCTTAGCAC
GGGAAGCTGGCCATAGGGAGAAGATGGATCAGGATGCTGACTACAGACATAAGCCCGGTGCTGACTGCCA
GGACAGGCCTTTGAATCTATCCCTTGGGCCGCTCCACGCCTGTCCTGCAATCTCTTTGAGCAAGTGTCTG
ATCCCCAGCATTGCCTGCCCCTTTTGTACTTTCAAGACCTTTTATCCGGAAGTCCTTATGATGCACCAGA
GACTTGAGCACAGGTACAACCCTGACCCGCACAAGAACGGCAGCAGCAAGTCTGTGCTGAGGAACAGGCG
TACCGGGTGCCCTCCGGCTTTGCTGGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCC
AAGACTGCCTTCTCACCACACTCGAAGTCCCTGCACTCAGAGAAGGCTCGGCAGGGGGCCTCGGGGCCAA
GCAAAGCACCCCAGACTTCAGGACCAGACAACAGCACTTTAGCCCCAAGTAACCTGAAGTCACACAGGTC
ACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCGTC
CCTGCTGCTATGGATAAGGTGAAGAGACCTGAGCCAAAACTGAAGTCCCTACCAGCCTCCCCGTCTCAGT
CCCCCCTCAGCAGTAATAATAGCAACGGTTCTGTTGAGTATCCCGTGAAGGTTGACGGCCCATGGGCACA
GCAAGGGAGAGACTACTACTGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCC
AAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAGCATGCAGGGACCAATGGCAGAAGGGGCTTTG
AGCTCCCCAAGTACCATGTGGTCAGGAGCATCACCTCCTTGCTACCACCAGAGTGTGTGCGCCCACCGCC
TGTGCTGCCCCACAAAGCCCGTTTCCTGAGCCCTGGGGAGGTGGAGTCACCCAGTGTGTTGGCTGTGCAG
AAGCCCTACAGTGCCTCTGGACCCCTGTATACCTGTGGACCCGTGGGACACGCAGGAGGCAGCCCAGCCC
TTGAAGGAAAGAGGCCTGTGTCACATCAGCACCTATCTAACAGCATGCTGCAGAAGAGAAGCTATGAGAA
TTTTATTGGAAATACACATTACCGACCAAATGACAAAAAACCTTGA

Translation (1041 aa):
MPTQSLLVYMDGPEVLSSSLGSQMEVDDAVPIKGPVAVPFRAAQEKSMAVAEGHMPLDCMFCSQVFSQAE
DLSQHVLLQHRPTLCEPAVLRVEAEYLSPLDKALEPTEPALEKSGEDPEELSCDVCGQTFPVAFDVESHM
KKHKDSFTYGCSMCGRRFKEPWFLKNHMRTHNGKSGTRSKLQQGMESPVTINEVVQPHAPGSISTPYKIC
MVCGFLFPNKQSLIEHSKVHAKETVPSASNVAPDDHREEPTSPREELLQFLNLRPRSTAGSTVKPMTCIP
QLDPFTTYQAWQLATKGKVAVAQEEVKESGQEGSTDNDDSCSEKEELGEIWVGGKAEGSGKSKTSKSSCP
GLSQDKEKPRHANSEVPSGDSDPKLSSSKEKPTHCSECSKAFRTYHQLVLHSRVHRKDRRTDALSPTMAV
DARQPGTCSPDLSTTLEDSGAGDREGGSEDGSEDGLPDGLHLDKNDDGGKAKPLPSSRECSYCGKFFRSN
YYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHKDKQPVDAAAESKSEGRSQEPQDALLTAADS
AQTKNLKRFLDGAKDVKGSPPAKQLKEMPSVFQSVLSPAHSNDTQDFHKHAADSAEKARKSPAPTYLDMQ
RKKAGEPQASSPVCRLEGVGSLAREAGHREKMDQDADYRHKPGADCQDRPLNLSLGPLHACPAISLSKCL
IPSIACPFCTFKTFYPEVLMMHQRLEHRYNPDPHKNGSSKSVLRNRRTGCPPALLGKDVPPLSGLHKPKA
KTAFSPHSKSLHSEKARQGASGPSKAPQTSGPDNSTLAPSNLKSHRSQPNAGGTSATRQQQSELFPKGGV
PAAMDKVKRPEPKLKSLPASPSQSPLSSNNSNGSVEYPVKVDGPWAQQGRDYYCHRNSGSAAAEYSEPHP
KRLKSSAVSLDTEHAGTNGRRGFELPKYHVVRSITSLLPPECVRPPPVLPHKARFLSPGEVESPSVLAVQ
KPYSASGPLYTCGPVGHAGGSPALEGKRPVSHQHLSNSMLQKRSYENFIGNTHYRPNDKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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