NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55507.1 Public Homo sapiens X FHL1 24 110 108 CCDS HistoryNCBI Gene:2273Re-query CCDS DB by CCDS ID:55507.1Re-query CCDS DB by GeneID:2273See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394155.8 ENSP00000377710.2 MANE Plus Clinical Accepted alive Link to Ensembl Transcript Viewer:ENST00000394155.8Link to Ensembl Protein Viewer:ENSP00000377710.2Re-query CCDS DB by Nucleotide ID:ENST00000394155Re-query CCDS DB by Protein ID:ENSP00000377710
Original member Current member EBI ENST00000651089.1 ENSP00000498684.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651089.1Link to Ensembl Protein Viewer:ENSP00000498684.1Re-query CCDS DB by Nucleotide ID:ENST00000651089Re-query CCDS DB by Protein ID:ENSP00000498684
Original member Current member NCBI NM_001159702.3 NP_001153174.1 MANE Plus Clinical Accepted alive Link to Nucleotide Sequence:NM_001159702.3Link to Protein Sequence:NP_001153174.1Re-query CCDS DB by Nucleotide ID:NM_001159702Re-query CCDS DB by Protein ID:NP_001153174Link to BLAST:NP_001153174.1
Original member Current member NCBI NM_001369326.1 NP_001356255.1 Accepted alive Link to Nucleotide Sequence:NM_001369326.1Link to Protein Sequence:NP_001356255.1Re-query CCDS DB by Nucleotide ID:NM_001369326Re-query CCDS DB by Protein ID:NP_001356255Link to BLAST:NP_001356255.1
Original member Current member NCBI NM_001369327.2 NP_001356256.1 Accepted alive Link to Nucleotide Sequence:NM_001369327.2Link to Protein Sequence:NP_001356256.1Re-query CCDS DB by Nucleotide ID:NM_001369327Re-query CCDS DB by Protein ID:NP_001356256Link to BLAST:NP_001356256.1
Original member Current member NCBI NM_001369328.1 NP_001356257.1 Accepted alive Link to Nucleotide Sequence:NM_001369328.1Link to Protein Sequence:NP_001356257.1Re-query CCDS DB by Nucleotide ID:NM_001369328Re-query CCDS DB by Protein ID:NP_001356257Link to BLAST:NP_001356257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153174.1 323 Q13642-2 323 100% 0 0
NP_001356255.1 323 Q13642-2 323 100% 0 0
NP_001356256.1 323 Q13642-2 323 100% 0 0
NP_001356257.1 323 Q13642-2 323 100% 0 0

Chromosomal Locations for CCDS 55507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136206433 136206588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136207016 136207190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136207792 136207961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136208455 136208641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136209243 136209442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136209871 136209954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCGGAGAAGTTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAAGAAGTATGTGCAAAAGGATG
GCCACCACTGCTGCCTGAAATGCTTTGACAAGTTCTGTGCCAACACCTGTGTGGAATGCCGCAAGCCCAT
CGGTGCGGACTCCAAGGAGGTGCACTATAAGAACCGCTTCTGGCATGACACCTGCTTCCGCTGTGCCAAG
TGCCTTCACCCCTTGGCCAATGAGACCTTTGTGGCCAAGGACAACAAGATCCTGTGCAACAAGTGCACCA
CTCGGGAGGACTCCCCCAAGTGCAAGGGGTGCTTCAAGGCCATTGTGGCAGGAGATCAAAACGTGGAGTA
CAAGGGGACCGTCTGGCACAAAGACTGCTTCACCTGTAGTAACTGCAAGCAAGTCATCGGGACTGGAAGC
TTCTTCCCTAAAGGGGAGGACTTCTACTGCGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGA
AGTGCAACAAGGCCATCACATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGATTGCTTTGT
GTGTGTTACCTGCTCTAAGAAGCTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTG
GATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGAAAAGGACTG
TGTCAAGAGTGAGCCACCCAGTCTCTAAAGCTAGGAAGCCCCCAGTGTGCCACGGGAAACGCTTGCCTCT
CACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGTGGAGAGAGGACTTGTCCCTCGTGGGTG
GTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGAGGCCCGGGTTTGGTAAAGGCTCCAGTGT
GGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGA

Translation (323 aa):
MAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRFWHDTCFRCAK
CLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGS
FFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCV
DCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKPPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWV
VVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAKNAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH