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Report for CCDS32016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32016.1 Public Homo sapiens 13 RASA3 24 110 108 CCDS HistoryNCBI Gene:22821Re-query CCDS DB by CCDS ID:32016.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32016.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334062.8 ENSP00000335029.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334062.8Link to Ensembl Protein Viewer:ENSP00000335029.7Re-query CCDS DB by Nucleotide ID:ENST00000334062Re-query CCDS DB by Protein ID:ENSP00000335029
Original member Current member NCBI NM_007368.4 NP_031394.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007368.4Link to Protein Sequence:NP_031394.2Re-query CCDS DB by Nucleotide ID:NM_007368Re-query CCDS DB by Protein ID:NP_031394Link to BLAST:NP_031394.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031394.2 834 Q14644-1 834 100% 0 0

Chromosomal Locations for CCDS 32016.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113979347 113979422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113981675 113981858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113992485 113992588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113996531 113996739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113999585 113999667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114000826 114000932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114007533 114007606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114009387 114009464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114011171 114011248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114013142 114013248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114015209 114015332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114016197 114016271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114017237 114017351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114018104 114018252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114018763 114018919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114021404 114021508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114024279 114024355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114027389 114027461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114027847 114027927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114029811 114029887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114041000 114041094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114052052 114052155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114073720 114073837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114132435 114132489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGCGGTGGAGGACGAGGGGCTCCGGGTCTTCCAGAGCGTGAAGATCAAGATCGGTGAAGCCAAAAACC
TTCCCTCTTACCCGGGGCCGAGCAAGATGAGGGATTGCTACTGCACGGTGAACCTGGACCAGGAGGAGGT
TTTCAGGACCAAAATTGTGGAAAAGTCACTCTGCCCGTTTTACGGAGAAGACTTTTACTGTGAAATTCCT
CGGAGCTTTCGTCACCTGTCCTTCTACATTTTCGATAGAGACGTTTTCCGGAGGGATTCCATCATAGGGA
AGGTGGCCATCCAGAAGGAGGACTTGCAGAAGTACCACAACAGGGACACCTGGTTCCAGCTGCAGCACGT
GGACGCTGACTCGGAAGTGCAGGGCAAAGTGCACCTGGAGCTGCGGCTGAGCGAGGTCATCACAGACACT
GGGGTCGTCTGCCACAAGCTCGCCACACGCATCGTCGAGTGCCAGGGCCTCCCCATCGTGAATGGGCAAT
GTGACCCCTACGCCACCGTGACGCTGGCAGGACCCTTCAGATCAGAAGCAAAGAAGACGAAAGTGAAGAG
GAAGACCAACAATCCCCAGTTCGATGAAGTGTTTTATTTTGAGGTGACCCGGCCCTGTAGCTACAGCAAG
AAGTCCCACTTTGACTTTGAGGAGGAAGACGTGGACAAGCTCGAAATCAGAGTTGACCTCTGGAATGCCA
GTAACCTGAAGTTTGGAGATGAATTCCTGGGAGAACTAAGGATCCCGTTGAAAGTCCTGCGGCAGTCCAG
CTCCTACGAGGCGTGGTACTTCCTCCAGCCCCGGGACAATGGTAGCAAGAGCCTAAAGCCAGACGACCTG
GGCTCCCTGCGGCTGAACGTGGTATACACGGAAGACCACGTGTTTTCTTCTGACTATTACAGCCCTCTGC
GGGACCTGCTGTTGAAGTCTGCGGATGTGGAGCCCGTGTCAGCGTCTGCGGCCCACATCCTGGGCGAGGT
TTGCCGGGAGAAGCAGGAGGCGGCCGTCCCGCTGGTGCGGCTCTTCCTACACTATGGCAGGGTGGTGCCA
TTCATCAGTGCCATCGCCAGCGCGGAGGTGAAGCGGACCCAGGACCCCAACACCATCTTCCGAGGAAACT
CACTGGCGTCCAAGTGCATCGACGAGACCATGAAGCTGGCGGGGATGCATTACCTGCATGTCACCCTGAA
GCCCGCCATCGAGGAGATATGCCAGAGCCACAAACCCTGTGAAATCGACCCTGTGAAGTTGAAAGACGGA
GAAAACCTTGAAAACAACATGGAGAACCTACGGCAGTATGTGGACCGCGTCTTCCACGCCATCACTGAGT
CTGGGGTGAGCTGCCCGACCGTCATGTGTGACATCTTCTTCTCCCTCCGGGAGGCGGCGGCCAAGCGCTT
CCAGGATGACCCGGACGTCAGGTACACTGCAGTGAGCAGCTTCATCTTCCTGAGGTTCTTTGCGCCCGCC
ATTCTCTCCCCCAACCTCTTCCAGCTCACGCCGCACCACACGGACCCCCAGACGTCCAGGACGCTGACAT
TGATCTCCAAGACCGTTCAGACCCTCGGCAGCCTGTCCAAGTCCAAATCTGCGAGTTTTAAGGAGTCCTA
CATGGCTACATTTTATGAATTCTTCAATGAGCAGAAATATGCTGATGCGGTGAAGAACTTCTTGGATCTG
ATTTCGTCCTCGGGGAGAAGAGACCCCAAGAGTGTTGAGCAGCCCATCGTGCTTAAAGAAGGGTTCATGA
TCAAGAGGGCCCAAGGACGGAAGCGCTTTGGGATGAAGAATTTTAAGAAGAGATGGTTTCGCTTGACCAA
CCATGAATTTACCTACCACAAAAGCAAAGGGGACCAGCCTCTCTACAGCATTCCCATCGAGAACATCCTG
GCAGTGGAGAAGCTGGAGGAGGAGTCTTTCAAAATGAAAAACATGTTCCAGGTCATCCAGCCAGAGCGTG
CGCTGTACATCCAGGCCAACAACTGCGTGGAGGCCAAGGACTGGATCGACATTCTCACCAAAGTGAGCCA
GTGCAACCAGAAGCGCCTCACCGTCTACCACCCGTCCGCCTACCTGAGCGGCCACTGGCTGTGCTGTAGG
GCGCCATCCGACTCGGCTCCGGGCTGCTCGCCCTGCACTGGCGGCCTCCCAGCCAACATCCAGCTGGACA
TTGATGGGGACCGTGAGACGGAGCGTATCTACTCCCTCTTCAACTTGTACATGAGCAAGCTGGAGAAGAT
GCAGGAGGCCTGTGGGAGCAAATCTGTGTATGACGGCCCGGAGCAGGAGGAGTATTCGACGTTCGTCATT
GACGACCCCCAGGAGACCTACAAGACGCTAAAGCAAGTCATCGCTGGGGTTGGGGCTTTGGAGCAGGAGC
ACGCCCAGTATAAGAGGGACAAGTTCAAGAAGACGAAATATGGAAGCCAGGAGCACCCCATCGGAGACAA
GAGCTTCCAGAACTACATCCGGCAGCAGTCCGAGACCTCCACTCATTCCATTTAA

Translation (834 aa):
MAVEDEGLRVFQSVKIKIGEAKNLPSYPGPSKMRDCYCTVNLDQEEVFRTKIVEKSLCPFYGEDFYCEIP
RSFRHLSFYIFDRDVFRRDSIIGKVAIQKEDLQKYHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDT
GVVCHKLATRIVECQGLPIVNGQCDPYATVTLAGPFRSEAKKTKVKRKTNNPQFDEVFYFEVTRPCSYSK
KSHFDFEEEDVDKLEIRVDLWNASNLKFGDEFLGELRIPLKVLRQSSSYEAWYFLQPRDNGSKSLKPDDL
GSLRLNVVYTEDHVFSSDYYSPLRDLLLKSADVEPVSASAAHILGEVCREKQEAAVPLVRLFLHYGRVVP
FISAIASAEVKRTQDPNTIFRGNSLASKCIDETMKLAGMHYLHVTLKPAIEEICQSHKPCEIDPVKLKDG
ENLENNMENLRQYVDRVFHAITESGVSCPTVMCDIFFSLREAAAKRFQDDPDVRYTAVSSFIFLRFFAPA
ILSPNLFQLTPHHTDPQTSRTLTLISKTVQTLGSLSKSKSASFKESYMATFYEFFNEQKYADAVKNFLDL
ISSSGRRDPKSVEQPIVLKEGFMIKRAQGRKRFGMKNFKKRWFRLTNHEFTYHKSKGDQPLYSIPIENIL
AVEKLEEESFKMKNMFQVIQPERALYIQANNCVEAKDWIDILTKVSQCNQKRLTVYHPSAYLSGHWLCCR
APSDSAPGCSPCTGGLPANIQLDIDGDRETERIYSLFNLYMSKLEKMQEACGSKSVYDGPEQEEYSTFVI
DDPQETYKTLKQVIAGVGALEQEHAQYKRDKFKKTKYGSQEHPIGDKSFQNYIRQQSETSTHSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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