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Report for CCDS16163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16163.1 Public Mus musculus 2 Sestd1 23 108 98 CCDS HistoryNCBI Gene:228071Re-query CCDS DB by CCDS ID:16163.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102659.1 ENSMUSP00000099720.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102659.1Link to Ensembl Protein Viewer:ENSMUSP00000099720.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102659Re-query CCDS DB by Protein ID:ENSMUSP00000099720
Original member Current member EBI ENSMUST00000102660.7 ENSMUSP00000099721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102660.7Link to Ensembl Protein Viewer:ENSMUSP00000099721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102660Re-query CCDS DB by Protein ID:ENSMUSP00000099721
Original member Current member NCBI NM_175465.6 NP_780674.1 Accepted alive Link to Nucleotide Sequence:NM_175465.6Link to Protein Sequence:NP_780674.1Re-query CCDS DB by Nucleotide ID:NM_175465Re-query CCDS DB by Protein ID:NP_780674Link to BLAST:NP_780674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780674.1 696 Q80UK0 696 100% 0 0

Chromosomal Locations for CCDS 16163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77187131 77187260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77188500 77188621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77190961 77191152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77191699 77191821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77192499 77192580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77196823 77196982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77198289 77198403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77198866 77199060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77206206 77206328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77212360 77212571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77215062 77215117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77216923 77217020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77218089 77218202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77230664 77230777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77234649 77234739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77241613 77241721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77245017 77245071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGAGGCCTCGGTGATATTGCCCATTCTGAAGAAGAAGCTGGCCTTCCTTTCAGGAGGAAAGGACAGAC
GCAGTGGACTCATCTTGACAATTCCGCTGTGCCTTGAGCAGACAAGTATGGATGAGCTGAGTGTCACTTT
GGATTATCTACTCAGCATTCCAAGTGAGAAATGTAAGGCCAGAGGATTCACTGTGATCGTGGATGGCAGG
AAGTCTCAGTGGAATGTGGTGAAGACAGTTGTCTTAATGCTGCAGAATGTTGTTCCAGCCGAGGTATCCC
TTGTTTGTGTAGTGAAGCCAGATGAATTCTGGGATAAGAAAGTAACACACTTTTGTTTTTGGAAAGAAAA
GGACAGACTTGGCTTTGAGGTTATTTTAGTGTCCGCCAATAAGTTGACGCGTTACATAGAGCCATGCCAG
TTGACAGAAGACTTTGGTGGGAGTCTCACCTATGACCACATGGACTGGCTGAATAAGAGGCTGGTCTTTG
AGAAGTTTACAAAGGAGTCTACATCATTGCTAGATGAACTTGCTCTGATTAACAATGGAAGTGATAAGGG
GAATGAGCAGGAGAAAGAAAGGTCTGTGGATTTAAACTTTCTTCCATCCGTTGATCCTGAGACGGTTCTT
CAGACAGGGCATGAGTTGTTATCTGAATTACAGCAGCGTCGATTTAATGGCTCCGACGGAGGGGTCTCGT
GGTCTCCTATGGATGACGAGCTGCTGGCACAGCCGCAGGTTATGAAGTTGCTGGACTCACTCCGGGAGCA
GTACACGCGCTACCAGGAAGTCTGCAGGCAGCGCAGTAAGCGCACACAGCTGGAGGAGATCCAGCAGAAG
GTGATGCAGGTTGTGAACTGGCTTGAAGGGCCTGGATCTGAGCAACTGAGAGCACAGTGGGGCATTGGTG
ACTCGATCAGGGCCTCCCAGGCCCTGCAACAGAAGCATGAGGAGATCGAGAGCCAACACAGCGAGTGGTT
CGCAGTATACGTGGAGCTTAACCAGCAGATTGCAGCACTCTTAAACGCTGGAGACGAGGAAGATCTTGTG
GAGTTGAAGTCTCTACAGCAACAGCTTAGCGACGTTTGCTATCGACAGGCCAGTCAGCTAGAATTTAGGC
AAAACCTCCTGCAGGCAGCTTTGGAATTTCATGGTGTGGCCCAAGATTTGTCTCAGCAGTTGGACGGCTT
ATTAGGGATGTTGTGCGTAGATGTAGCACCAGCTGATGGAGCATCGATTCAGCAAACTTTAAAACTGCTT
GAAGAGAAGCTGAAAAGTGTTGATGTAGGATTGCAAGGCTTGCGAGAAAAAGGTCAAGGTCTCCTGGATC
AGATCTCCAACCAGGCTTCCTGGGCCTATGGCAAGGATGTAACTATTGAAAATAAAGAAAACGTGGACCA
CATACAAGGAGTGATGGAAGACATGCAACTTAGGAAACAAAGATGTGAGGACATGGTAGATGTGCGGAGG
CTGAAGATGCTTCAGATGGTGCAGTTGTTTAAGTGTGAAGAGGATGCTTCACAGGCAGTAGAATGGCTGA
GTGAACTTCTGGATGCCCTGCTGAAGACCCATATCAGGCTGGGTGACGATGCTCAGGAAACAAAGGTTTT
ACTGGAAAAACACAGAAAATTTGTCGATGTTGCCCAGAGTACTTACGACTATGGCAGACAGCTGCTGCAG
GCCACAGTTGTACTGTGCCAGTCTCTGCGCTGCACTTCCCGGTCCTCAGGGGACACACTTCCTCGACTGA
ACAGAGTGTGGAAGCAGTTTACAGTCGCATCTGAAGAGAGAGTGCACAGGTTGGAGATGGCTATTGCCTT
TCACTCCAATGCCGAAAAGATTTTGCAAGACTGCCCAGAAGAGCCTGAAGCAATGAATGATGAGGAACAG
TTTGAGGAAATTGAAGCAATTGGAAAATCACTTCTGGATAGACTCACTATCCCCGTGGTTTACCCCGACG
GAACTGAACAATATTTTGGAAGTCCAAGTGACATGGCTTCTACTGCAGAGCACATCAGGGACAGAATGAA
ACTGGTCAGTCTCAAAAGGCAGCAGCTGAGACATCCCGAATTGGTGACCACGGAGAGCTAA

Translation (696 aa):
MEASVILPILKKKLAFLSGGKDRRSGLILTIPLCLEQTSMDELSVTLDYLLSIPSEKCKARGFTVIVDGR
KSQWNVVKTVVLMLQNVVPAEVSLVCVVKPDEFWDKKVTHFCFWKEKDRLGFEVILVSANKLTRYIEPCQ
LTEDFGGSLTYDHMDWLNKRLVFEKFTKESTSLLDELALINNGSDKGNEQEKERSVDLNFLPSVDPETVL
QTGHELLSELQQRRFNGSDGGVSWSPMDDELLAQPQVMKLLDSLREQYTRYQEVCRQRSKRTQLEEIQQK
VMQVVNWLEGPGSEQLRAQWGIGDSIRASQALQQKHEEIESQHSEWFAVYVELNQQIAALLNAGDEEDLV
ELKSLQQQLSDVCYRQASQLEFRQNLLQAALEFHGVAQDLSQQLDGLLGMLCVDVAPADGASIQQTLKLL
EEKLKSVDVGLQGLREKGQGLLDQISNQASWAYGKDVTIENKENVDHIQGVMEDMQLRKQRCEDMVDVRR
LKMLQMVQLFKCEEDASQAVEWLSELLDALLKTHIRLGDDAQETKVLLEKHRKFVDVAQSTYDYGRQLLQ
ATVVLCQSLRCTSRSSGDTLPRLNRVWKQFTVASEERVHRLEMAIAFHSNAEKILQDCPEEPEAMNDEEQ
FEEIEAIGKSLLDRLTIPVVYPDGTEQYFGSPSDMASTAEHIRDRMKLVSLKRQQLRHPELVTTES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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