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Report for CCDS20821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20821.1 Public Mus musculus 7 Slc27a5 23 108 98 CCDS HistoryNCBI Gene:26459Re-query CCDS DB by CCDS ID:20821.1Re-query CCDS DB by GeneID:26459See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032539.13 ENSMUSP00000032539.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032539.13Link to Ensembl Protein Viewer:ENSMUSP00000032539.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032539Re-query CCDS DB by Protein ID:ENSMUSP00000032539
Original member Current member NCBI NM_009512.2 NP_033538.2 Accepted alive Link to Nucleotide Sequence:NM_009512.2Link to Protein Sequence:NP_033538.2Re-query CCDS DB by Nucleotide ID:NM_009512Re-query CCDS DB by Protein ID:NP_033538Link to BLAST:NP_033538.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033538.2 689 Q4LDG0 689 100% 0 0

Chromosomal Locations for CCDS 20821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12988476 12988652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12988733 12988863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12989010 12989107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12989354 12989552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12990967 12991057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12991145 12991339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12993315 12993439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12994880 12995038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12996231 12996440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12997378 12998062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGGGTATTTGGAAGAAACTAACCTTACTGCTGTTGCTGCTTCTGCTGGTTGGCCTGGGGCAGCCCCCAT
GGCCAGCAGCTATGGCTCTGGCCCTGCGTTGGTTCCTGGGAGACCCCACATGCCTTGTGCTGCTTGGCTT
GGCATTGCTGGGCAGACCCTGGATCAGCTCCTGGATGCCCCACTGGCTGAGCCTGGTAGGAGCAGCTCTT
ACCTTATTCCTATTGCCTCTACAGCCACCCCCAGGGCTACGCTGGCTGCATAAAGATGTGGCTTTCACCT
TCAAGATGCTTTTCTATGGCCTAAAGTTCAGGCGACGCCTTAACAAACATCCTCCAGAGACCTTTGTGGA
TGCTTTAGAGCGGCAAGCACTGGCATGGCCTGACCGGGTGGCCTTGGTGTGTACTGGGTCTGAGGGCTCC
TCAATCACAAATAGCCAGCTGGATGCCAGGTCCTGTCAGGCAGCATGGGTCCTGAAAGCAAAGCTGAAGG
ATGCCGTAATCCAGAACACAAGAGATGCTGCTGCTATCTTAGTTCTCCCGTCCAAGACCATTTCTGCTTT
GAGTGTGTTTCTGGGGTTGGCCAAGTTGGGCTGCCCTGTGGCCTGGATCAATCCACACAGCCGAGGGATG
CCCTTGCTACACTCTGTACGGAGCTCTGGGGCCAGTGTGCTGATTGTGGATCCAGACCTCCAGGAGAACC
TGGAAGAAGTCCTTCCCAAGCTGCTAGCTGAGAACATTCACTGCTTCTACCTTGGCCACAGCTCACCCAC
CCCGGGAGTAGAGGCTCTGGGAGCTTCCCTGGATGCTGCACCTTCTGACCCAGTACCTGCCAGCCTTCGA
GCTACGATTAAGTGGAAATCTCCTGCCATATTCATCTTTACTTCAGGGACCACTGGACTCCCAAAGCCAG
CCATCTTATCACATGAGCGGGTCATACAAGTGAGCAACGTGCTGTCCTTCTGTGGATGCAGAGCTGATGA
TGTGGTCTATGACGTCCTACCTCTGTACCATACGATAGGGCTTGTCCTTGGATTCCTTGGCTGCTTACAA
GTTGGAGCCACCTGTGTCCTGGCCCCCAAGTTCTCTGCCTCCCGATTCTGGGCTGAGTGCCGGCAGCATG
GCGTAACAGTGATCTTGTATGTGGGTGAAATCCTGCGGTACTTGTGTAACGTCCCTGAGCAACCAGAAGA
CAAGATACATACAGTGCGCTTGGCCATGGGCAATGGACTTCGGGCAAATGTGTGGAAAAACTTCCAGCAA
CGCTTTGGTCCCATTCGGATCTGGGAATTCTACGGATCCACAGAGGGCAATGTGGGCTTAATGAACTATG
TGGGCCACTGCGGGGCTGTGGGAAGGACCAGCTGCATCCTTCGAATGCTGACTCCCTTTGAGCTTGTACA
GTTCGACATAGAGACAGCAGAGCCTCTGAGGGACAAACAGGGTTTTTGCATTCCTGTGGAGCCAGGAAAG
CCAGGACTTCTTTTGACCAAGGTTCGAAAGAACCAACCCTTCCTGGGCTACCGTGGTTCCCAGGCCGAGT
CCAATCGGAAACTTGTTGCGAATGTACGACGCGTAGGAGACCTGTACTTCAACACTGGGGACGTGCTGAC
CTTGGACCAGGAAGGCTTCTTCTACTTTCAAGACCGCCTTGGTGACACCTTCCGGTGGAAGGGCGAAAAC
GTATCTACTGGAGAGGTGGAGTGTGTTTTGTCTAGCCTAGACTTCCTAGAGGAAGTCAATGTCTATGGTG
TGCCTGTGCCAGGGTGTGAGGGTAAGGTTGGCATGGCTGCTGTGAAACTGGCTCCTGGGAAGACTTTTGA
TGGGCAGAAGCTATACCAGCATGTCCGCTCCTGGCTCCCTGCCTATGCCACACCTCATTTCATCCGTATC
CAGGATTCCCTGGAGATCACAAACACCTACAAGCTGGTAAAGTCACGGCTGGTGCGTGAGGGTTTTGATG
TGGGGATCATTGCTGACCCCCTCTACATACTGGACAACAAGGCCCAGACCTTCCGGAGTCTGATGCCAGA
TGTGTACCAGGCTGTGTGTGAAGGAACCTGGAATCTCTGA

Translation (689 aa):
MGIWKKLTLLLLLLLLVGLGQPPWPAAMALALRWFLGDPTCLVLLGLALLGRPWISSWMPHWLSLVGAAL
TLFLLPLQPPPGLRWLHKDVAFTFKMLFYGLKFRRRLNKHPPETFVDALERQALAWPDRVALVCTGSEGS
SITNSQLDARSCQAAWVLKAKLKDAVIQNTRDAAAILVLPSKTISALSVFLGLAKLGCPVAWINPHSRGM
PLLHSVRSSGASVLIVDPDLQENLEEVLPKLLAENIHCFYLGHSSPTPGVEALGASLDAAPSDPVPASLR
ATIKWKSPAIFIFTSGTTGLPKPAILSHERVIQVSNVLSFCGCRADDVVYDVLPLYHTIGLVLGFLGCLQ
VGATCVLAPKFSASRFWAECRQHGVTVILYVGEILRYLCNVPEQPEDKIHTVRLAMGNGLRANVWKNFQQ
RFGPIRIWEFYGSTEGNVGLMNYVGHCGAVGRTSCILRMLTPFELVQFDIETAEPLRDKQGFCIPVEPGK
PGLLLTKVRKNQPFLGYRGSQAESNRKLVANVRRVGDLYFNTGDVLTLDQEGFFYFQDRLGDTFRWKGEN
VSTGEVECVLSSLDFLEEVNVYGVPVPGCEGKVGMAAVKLAPGKTFDGQKLYQHVRSWLPAYATPHFIRI
QDSLEITNTYKLVKSRLVREGFDVGIIADPLYILDNKAQTFRSLMPDVYQAVCEGTWNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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