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Report for CCDS50536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50536.1 Public Mus musculus 2 Lcn11 23 108 98 CCDS HistoryNCBI Gene:227630Re-query CCDS DB by CCDS ID:50536.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091278.5 ENSMUSP00000088822.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091278.5Link to Ensembl Protein Viewer:ENSMUSP00000088822.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091278Re-query CCDS DB by Protein ID:ENSMUSP00000088822
Original member Current member NCBI NM_001100455.2 NP_001093925.1 Accepted alive Link to Nucleotide Sequence:NM_001100455.2Link to Protein Sequence:NP_001093925.1Re-query CCDS DB by Nucleotide ID:NM_001100455Re-query CCDS DB by Protein ID:NP_001093925Link to BLAST:NP_001093925.1

Chromosomal Locations for CCDS 50536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25777036 25777131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25777698 25777834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25778065 25778138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25778989 25779096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25779248 25779349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25780164 25780183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGCCAAGAAGACACAGCAGAGGAATGAAGCTTCTACTGCTGCTGAGTGTGGGGCTGGGCCTGACCTGGG
CCCTGCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTCCACTGACCG
GTCTCTCATTGAGGAAGGAGGTGCCTATCGGTGCTTCATGACTGACATTGTCCTCCTGGACAATGGCAAC
CTGAATGTCACCTACTTCCACAGGAAAGATGGAAAGTGTGTGAAGGAATTCTACATCGCAGAGAAGACTG
ACACACCTGGACAGTACACCTTTGAGTACCAAGGCAGAAACTCTCTGACTTTTGTGCATGTTACTGAGGA
CTTCGCCATCATGGACTTGGAAAACCAGAGTGAAGGGGGCACCACCATTGTAATTGAGTTCCACGGCAGG
AGTCTGTCCACAGATGAGCTCGGATGGGAACGCTATCTCGTTCACACACGCAGAAGAGGCATCGCACCAG
AGAACATTGTGGACCTTTCCTTATCTCGTCGATGTGACACACACTAG

Translation (178 aa):
MPRRHSRGMKLLLLLSVGLGLTWALQDFHPEQVTGPWHTLKLASTDRSLIEEGGAYRCFMTDIVLLDNGN
LNVTYFHRKDGKCVKEFYIAEKTDTPGQYTFEYQGRNSLTFVHVTEDFAIMDLENQSEGGTTIVIEFHGR
SLSTDELGWERYLVHTRRRGIAPENIVDLSLSRRCDTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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