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Report for CCDS37044.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37044.2 Public Mus musculus 15 Zfr 23 108 98 CCDS HistoryNCBI Gene:22763Re-query CCDS DB by CCDS ID:37044.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37044.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37044.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122941.7 ENSMUSP00000118911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122941.7Link to Ensembl Protein Viewer:ENSMUSP00000118911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122941Re-query CCDS DB by Protein ID:ENSMUSP00000118911
Original member Current member NCBI NM_011767.2 NP_035897.2 Accepted alive Link to Nucleotide Sequence:NM_011767.2Link to Protein Sequence:NP_035897.2Re-query CCDS DB by Nucleotide ID:NM_011767Re-query CCDS DB by Protein ID:NP_035897Link to BLAST:NP_035897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035897.2 1074 O88532 1074 100% 0 0

Chromosomal Locations for CCDS 37044.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 12117911 12117947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12118239 12118338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12136396 12136678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12137905 12138049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12140434 12140652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12146149 12146396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12149528 12149719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12150173 12150464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12152801 12152997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12154446 12154565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12156263 12156408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12159599 12159761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12160485 12160690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12162114 12162264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12166145 12166286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12170816 12170913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12171759 12171854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12180622 12180733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12180843 12180940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12183959 12184138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATGTGCCCAGCCGGCTGGGGGAAGATGCCAAAATGG
CG
ACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAGCCA
G
CAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCA
GTA
GCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTC
CA
GTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCATATGGAGGCTACCCCACTGCACACACAGCAACCGA
C
TATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
GAC
TCATATTCGTATGTAAGATCCACAGCCCCTGCTGTAGCTTATGATAGTAAGCAGTACTACCAACAGC
CA
ACAGCAACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCTGTTGCTGAAACCTACTATCA
G
ACAGCCCCTAAAGCAGGTTATAGCCAAGGTGCAACACAGTATACTCAAGCGCAGCAAGCTCGGCAAGTG
ACA
GCCATAAAACCAGCCACACCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACTG
TA
CAACCGGTGGCAGCTGCAGCTACTGTGGTACCATCCTATACTCAGAGTGCTACTTACAGTACCACAGC
A
GTTACTTATTCTGGTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTAC
CAA
CAGCAGCAGCAACAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGA
CA
GGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACC
A
CCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAGACTTATAAAGAGCACTTA
GAA
GGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACT
CA
ACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATA
T
GCTGCCCACATTCGTGGTGCTAAGCATCAGAAAGTGGTTAAATTACACACAAAACTTGGTAAACCTATT
CCT
TCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGCATCTGCTTCAAAACCAACTG
CC
TCTCCTTCAAGTATTGGCGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTTCTTCAGTGAA
A
GGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGATACCTACC
AAT
ATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTGGTGGAAATAAGCTACAGTCAACAG
GA
AATAAAACGGAAGACTTAAAAGGAATTGACTGTGTTAAGAATACTCCTGCTGCCTCTGCTGTGCAGAT
T
CCAGAAGTAAAGCAAGATGCAGGGTCAGAACCAGTCACACCTGCGTCCCTTGCTGCTCTGCAGAGTGAT
GTA
CAACCAGTGGGACATGATTATGTTGAAGAGGTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATT
GT
AAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAG
A
CTTCAGTATAAAAAAAAAGTAAATCCAGATTTGCAAGTAGAAGTGAAGCCCAGTATTCGTGCCAGAAAA
ATT
CAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAGGAATATTGGCGGAGACGAGAAGAGGAGGAAC
GC
TGGAGGATGGAGATAAGACGTTATGAAGAAGACATGTACTGGAGAAGAATGGAGGAAGAGCAGCATCA
T
TGGGATGATCGCAGACGAATGCCTGATGGCGGCTATCCTCATGGTCCTCCCGGCCCACTAGGTCTTTTG
GGA
GTCCGACCAGGCATGCCTCCCCAGCCGCAGGGTCCTGCCCCCTTACGGCGTCCTGACTCATCTGATG
AT
CGTTATGTAATGACAAAGCATGCAACTATTTATCCAACTGAAGAAGAGTTACAAGCCGTCCAGAAAAT
T
GTTTCTATCACTGAGCGTGCTTTAAAGCTTGTTTCAGACAGTTTGTCGGAACATGAGAAGAGCAAGAAC
AAA
GAGGGAGATGATAAGAAAGAGGGAGGTAAAGACAGAGCTCTGAAAGGGGTGTTGCGAGTAGGCGTGC
TG
GCAAAAGGATTACTTCTCCGAGGAGACAGGAATGTCAACCTTGTTTTGCTGTGCTCAGAAAAACCTTC
A
AAGTCGTTATTAAGCCGTATTGCAGAAAACCTACCCAAACAGCTTGCTGTTATAAGTCCTGAGAAGTAT
GAC
ATAAAATGTGCCGTGTCTGAGGCAGCGATAATTTTGAACTCGTGTGTGGAGCCCAAAATGCAAGTCA
CT
ATCACCCTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAGATGTAACCTCGGGTATGGT
G
AAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAG
TGG
TTCCAGGCTAGAGCTAATGGCCTACAGTCGTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTC
AA
CGAGTTCCAACGTGGTCTGATTTTCCTAGCTGGGCTATGGAGTTACTGGTGGAGAAGGCAATTAGCAG
T
GCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATT
CTC
AAAGGCAGCCCTGGACTTCTGGACCCTTGTGAAAAGGATCCCTTTGACACTTTGGCAACAATGACTG
AC
CAACAGCGTGAAGACATTACATCCAGTGCACAGTTTGCATTGAGACTCCTTGCATTCCGTCAGATACA
C
AAAGTTCTGGGGATGGATCCATTACCACAAATGAATCAGCGCTTTAACATCCACAACAACAGGAAACGA
AGA
AGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAGAAAGACAAAAAGGATTATGATAACT
TT
TAA


Translation (1074 aa):
MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAP
V
AAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQ

D
SYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQT
APKAGYSQGATQYTQAQQARQV
T
AIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYS
GTSYSGYEAAVYSAASSYY
Q
QQQQQQKQAAAAAAAAAATAAWTGTTFTKKTPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQ
TYKEHL
E
GQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQK
VVKLHTKLGKPI
P
STEPNVVSQATSSTAASASKPTASPSSIGASNCTLNTSSIATSSVKGLSTTGNSSLNSTSNTKVSAIPT
N
MAAKKTSTPKINFV
GGNKLQSTGNKTEDLKGIDCVKNTPAASAVQIPEVKQDAGSEPVTPASLAALQSD
V
QPVGHDYVEE
VRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARK
I
QEEKMRKQMQKEEYWRRREEEERWRMEI
RRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLL
G
VRPGMPPQPQGPA
PLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKN
K
EGDDKKEGGKD
RALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPEKY
D
IKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREG
DVTSGMVKDPPDVLDRQKCLDALAALRHAK
W
FQ
ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGII
L
K
GSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMNQRFNIHNNRKR
R
RDSDGVDGFEAEGKKDKKDYDNF




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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