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Report for CCDS26273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26273.1 Public Mus musculus 13 Zscan12 23 108 98 CCDS HistoryNCBI Gene:22758Re-query CCDS DB by CCDS ID:26273.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053293.13 ENSMUSP00000058904.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053293.13Link to Ensembl Protein Viewer:ENSMUSP00000058904.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053293Re-query CCDS DB by Protein ID:ENSMUSP00000058904
Original member Current member EBI ENSMUST00000099720.2 ENSMUSP00000097308.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099720.2Link to Ensembl Protein Viewer:ENSMUSP00000097308.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099720Re-query CCDS DB by Protein ID:ENSMUSP00000097308
Original member Current member EBI ENSMUST00000225545.1 ENSMUSP00000153548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225545.1Link to Ensembl Protein Viewer:ENSMUSP00000153548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225545Re-query CCDS DB by Protein ID:ENSMUSP00000153548
Original member NCBI NM_016684.2 NP_057893.2 Updated not alive Link to Nucleotide Sequence:NM_016684.2Link to Protein Sequence:NP_057893.2Re-query CCDS DB by Nucleotide ID:NM_016684Re-query CCDS DB by Protein ID:NP_057893
Current member NCBI NM_016684.3 NP_057893.2 Accepted alive Link to Nucleotide Sequence:NM_016684.3Link to Protein Sequence:NP_057893.2Re-query CCDS DB by Nucleotide ID:NM_016684Re-query CCDS DB by Protein ID:NP_057893Link to BLAST:NP_057893.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057893.2 501 Q9Z1D7 501 100% 0 0

Chromosomal Locations for CCDS 26273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21363650 21364051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21366615 21366756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21368552 21369513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGACATCTACTAGTGATACCAAGGTCTGTAAGAACCAGGGTGGACTTTTGGAAATAAAAATGGAGGAAG
AATGTAAGTATACCACCAGACAAGATAGGAACCTACAAAAGAACACTTATAACAGAGACGTCTTCCGAAA
ATACTTCAGACAGTTTTGCTACCAGGAAACTTCTGGACCCCGGGAGGCTCTGAGCCGGCTGCGCGAGCTC
TGCAGACAGTGGCTGCGGCCGGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGT
TCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCGGAGAGTGTGGAGGAGGT
GGTGACTGTGCTGGAGGATTTAGAGAGAGAGCTTGATGAACTAGGATACCGGGCCTCAGTCCAAACTGAA
GAACAGGTAACGTTTCAGGAGGTGAAGCCTTTGGCAACAGAGCAGAAACCCAGCGTGTCCCTTCAGTTTG
TCAAAGCCAAGCCTGGGTGTGAACTTGCAGGCCGTGAAGCCCAGGAGGAGCAAGTTTCAGGTGTTGAGAC
TGGCAATGAGCCCAGGAATGTCACTCTAAAGCAAGGCCTCTGGGAAGGGACGGAAGCAGAACAGAATCCT
GCTAGCAGATTAGCAAAGGATGCACTTGAGTGTGAAGAAGCTCACAACCCTGGAGAAGAGTCTTCTGGTA
TTTCCCATGAAGACAGCCAGCCTCTGCGTAATGAAAATGGTGTAAATTCTCCTGCGAACTCAGAGTACGC
TAAACACCAGAGCATCTGTCCAGGGAGAAAAGTGCATGGGTGTGATGAGTGTGGAAAGAGTTTTACTCAG
CACTCGCGCCTCATAGAGCACAAGAGAGTCCACACTGGAGACAGGCCCTACAAATGTGAAGTATGTGGGA
AAACTTTCCGATGGAGGACTGTTCTTATTCGACACAAGGTGGTCCACACTGGAGAGAAACCGTATAAATG
TAATGAATGTGGCAGGGCTTTTGGCCAGTGGTCAGCACTTAACCAACATCAGAGACTTCACTCGGGAGAA
AAGCACTACCACTGTAACGAATGTGGCAAAGCCTTTTGCCAGAAAGCAGGCCTCTTTCACCATCTCAAGA
GCCATAGAAGAAACAGACCTTATCAATGTCTTCAGTGTAATAAAAGTTTTAATCGCCGTTCTACACTTTC
TCAGCATCAAGGAGTTCACACTGGAGCAAAACCCTACGAATGCAACGATTGTGGGAAAGCTTTTGTTTAT
AACTCATCTCTTGCTACCCATCAGGAAACCCATCACAAGGAGAAACCCTTCACTCAAAGTGGTCCTATTC
AGCAGCAGAGGAACCACACCAAGGAGAAGCCCTACAAATGCAGTGTATGTGGAAAAGCATTTATTCAAAA
AATAAGTCTTATAGAACACGAACAAATTCATACCGGAGAGAGACCGTATAAATGTGCTGAGGGCGGGAAG
GCCTTTATTCAGATGTCAGAACTCACAGAACATTAG

Translation (501 aa):
MTSTSDTKVCKNQGGLLEIKMEEECKYTTRQDRNLQKNTYNRDVFRKYFRQFCYQETSGPREALSRLREL
CRQWLRPDLNSKEQILELLVLEQFLTILPGELQAWVQEQNPESVEEVVTVLEDLERELDELGYRASVQTE
EQVTFQEVKPLATEQKPSVSLQFVKAKPGCELAGREAQEEQVSGVETGNEPRNVTLKQGLWEGTEAEQNP
ASRLAKDALECEEAHNPGEESSGISHEDSQPLRNENGVNSPANSEYAKHQSICPGRKVHGCDECGKSFTQ
HSRLIEHKRVHTGDRPYKCEVCGKTFRWRTVLIRHKVVHTGEKPYKCNECGRAFGQWSALNQHQRLHSGE
KHYHCNECGKAFCQKAGLFHHLKSHRRNRPYQCLQCNKSFNRRSTLSQHQGVHTGAKPYECNDCGKAFVY
NSSLATHQETHHKEKPFTQSGPIQQQRNHTKEKPYKCSVCGKAFIQKISLIEHEQIHTGERPYKCAEGGK
AFIQMSELTEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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