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Report for CCDS17187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17187.1 Public Mus musculus 2 Bhlhe23 23 108 98 CCDS HistoryNCBI Gene:140489Re-query CCDS DB by CCDS ID:17187.1Re-query CCDS DB by GeneID:140489See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108878.1 ENSMUSP00000104506.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108878.1Link to Ensembl Protein Viewer:ENSMUSP00000104506.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108878Re-query CCDS DB by Protein ID:ENSMUSP00000104506
Original member Current member NCBI NM_080641.5 NP_542372.2 Accepted alive Link to Nucleotide Sequence:NM_080641.5Link to Protein Sequence:NP_542372.2Re-query CCDS DB by Nucleotide ID:NM_080641Re-query CCDS DB by Protein ID:NP_542372Link to BLAST:NP_542372.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542372.2 223 Q8BGW3 223 100% 0 0

Chromosomal Locations for CCDS 17187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180776072 180776743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCCGAGCTCAAGTCGCTGTCGGGGGACTCGTACCTGGCGCTGAGCCACAGCTACACGGCGACCGGCC
ACGCCTACGCTGCAGCGCGCGGACCGGAGACCACACGCGGCTTCGGTGCATCGGGTCCGGGTGGCGACCT
CCCGGCGGCTCCCGCTTCTCGTGTCCCCGCCGCGACGGTGGAGAGCAGCGGCGAGCAGAGCGGCGACGAG
GACGAAGCCTTCGAGAGGCGGCGGCGGCGGCGAGGGTCCGGGGTTGCGGTTGACGCACGGCGGCGGCCCC
GGGAGCAGCGCTCGCTGAGGCTCAGCATCAACGCGCGCGAACGGCGACGCATGCATGACCTGAACGACGC
GCTGGACGGACTGCGCGCAGTCATCCCCTACGCGCACAGCCCGTCGGTGCGCAAGCTCTCCAAGATAGCC
ACACTTCTGCTGGCCAAAAACTACATCCTCATGCAGGCGCAGGCCCTGGAGGAGATGCGGCGCTTGGTAG
CATACCTCAACCAAGGCCAGGGCCTCGCGGCGCCGGTGGCCGCCGCGCCTCTAACGCCCTTTGGCCAGGC
AGCGATTTACCCGTTCTCGGCGGGCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTCAGGA
TCGCCCTCGGCGCTTTGCAAACACTGCGGCGAGAAGCCCTGA

Translation (223 aa):
MAELKSLSGDSYLALSHSYTATGHAYAAARGPETTRGFGASGPGGDLPAAPASRVPAATVESSGEQSGDE
DEAFERRRRRRGSGVAVDARRRPREQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIA
TLLLAKNYILMQAQALEEMRRLVAYLNQGQGLAAPVAAAPLTPFGQAAIYPFSAGTALGPCPDKCATFSG
SPSALCKHCGEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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