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Report for CCDS19550.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19550.2 Public Mus musculus 5 Wscd2 23 108 98 CCDS HistoryNCBI Gene:320916Re-query CCDS DB by CCDS ID:19550.2Re-query CCDS DB by GeneID:320916See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19550.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094452.3 ENSMUSP00000092021.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094452.3Link to Ensembl Protein Viewer:ENSMUSP00000092021.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094452Re-query CCDS DB by Protein ID:ENSMUSP00000092021
Original member Current member NCBI NM_177292.3 NP_796266.2 Accepted alive Link to Nucleotide Sequence:NM_177292.3Link to Protein Sequence:NP_796266.2Re-query CCDS DB by Nucleotide ID:NM_177292Re-query CCDS DB by Protein ID:NP_796266Link to BLAST:NP_796266.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796266.2 571 D4PHA7-1 571 100% 0 0

Chromosomal Locations for CCDS 19550.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113550935 113551334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113558349 113558463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113560901 113561085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113570637 113570758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113572239 113572413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113574019 113574183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113577263 113577463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113587793 113588145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGGCCAAGCTCTGGTTCAAGTTCCAGCGGTGTTTCCGGTATTTCCGCAGGAAGCCGGTGCGCTTCTTTA
CCCTGCTGGCAATCTACCTGACCGCTGGGAGCCTCGTCTTCCTGCACTCGGGCTTCGTGGGCCAGCCTGC
GGTGCCCCAGAGCCAGGCCAGCCCCGCAGCGGGGAGCCCGGTAGAAGGAGCGGAGCTGCCTTTCCTGGGT
GATTTGCACCTGGGCAGAGGTTTCCGGGACACGGTGGAGGCCTCCAGTATTGCACGCAGGTACGGACCCA
CATTCAAGGGCAAGGACACCAGCGAGAGAGCCAAGCTAGGCGACTACGGAGGAGCCTGGAGCCGAGCCCT
CAAGGGAAGGGTTGTCCGGGAGAAAGAGAAGGAAAAGGAGGAGGAGAAAGCCAAGTACATCGGCTGCTAC
CTGGACGACACCCAGAGCCGGGCCCTGCGAGGTGTGTCCTTTTTCGACTACAAAAAGATGACAGTCTTCC
GTTGCCAGGACAACTGTGCTGAACGGGGTTATCTGTATGCTGGGCTGGAGTTCGGCGCAGAGTGCTACTG
TGGCCACAAAATCCAGGCAGCCAACGTGAGCGAATCAGACTGTGACATGGAATGCAAAGGAGAGCGGGGC
AGTGTGTGTGGCGGCATCAACCGTCTCTCAGTCTACCGGCTGCAGCTGGCTCAGGAGTCTGCCCGAAGGT
ATGGAAGTGCAGTGTTCAGGGGCTGCTTCCGCCGACCCAACAACCTCTCCCTGGCCTTGCCCGTGTCAGC
TGCCATGCCAAACATGTCTGTGGACAAGTGTGTGGACCTCTGCACAGAGAAGGAGTTCCCCCTGGCAGCC
CTCGCTGGCACTGCCTGCCACTGTGGTTTTCCCACCACACGGTTCCCTCTTCATGACCGGGAGGATGAGC
AACTGTGTGCCCAGAAGTGCAGCGCGGAGGAGTTCGAGAGCTGTGGGACCCCCAGCTACTTCATCGTGTA
CCAGACACAGGTCCAAGACAACCGCTGTATGGACAGACGGTTCCTCCCAGCCAAGTCTAAGAAGCTCATC
GCTCTAGCCAGCTTCCCGGGCGCTGGCAACACGTGGGCTCGCCACCTCATCGAGCTGGCCACCGGCTTCT
ACACTGGCAGCTACTACTTTGATGGCTCTCTGTACAACAAAGGGTTCAAAGGTGAGCGGGACCACTGGCG
AAGCGGGCGGACCATCTGCATCAAGACCCATGAAAGCGGCCAGAAGGAGATCGAGGCCTTCGACGCAGCC
ATTCTGCTCATCCGCAACCCCTACAAGGCCCTCATGGCTGAGTTCAACCGCAAATATGGAGGCCACATAG
GCTTTGCCGCCCACGCCCACTGGAAAGGCAAAGAGTGGCCCGAGTTCGTGAGGAACTATGCCCCGTGGTG
GGCCACGCACACGCTGGACTGGCTCAAGTTTGGCAAGACCGTCCTGGTGGTGCACTTCGAGGACCTGAAG
CAGGACTTGTTTACGCAGCTGGGCCGCATGGTCAGCCTGCTGGGCGTGGCGGTCAGGGAGGATCGGCTGC
TGTGCGTGGAGAGCCAGAAGGACGGCAACTTCAAGCGCTCGGGGCTGCGCAAGCTGGAGTATGACCCTTA
CACAGCCGAGATGCGCAGGACCATTGCCGCCTACATCCGAATGGTGGACACGGCACTACGTAGCCGCAAC
CTCACTGGGGTGCCTGATGCCTATGGCCCAAGATGA

Translation (571 aa):
MAKLWFKFQRCFRYFRRKPVRFFTLLAIYLTAGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLG
DLHLGRGFRDTVEASSIARRYGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKAKYIGCY
LDDTQSRALRGVSFFDYKKMTVFRCQDNCAERGYLYAGLEFGAECYCGHKIQAANVSESDCDMECKGERG
SVCGGINRLSVYRLQLAQESARRYGSAVFRGCFRRPNNLSLALPVSAAMPNMSVDKCVDLCTEKEFPLAA
LAGTACHCGFPTTRFPLHDREDEQLCAQKCSAEEFESCGTPSYFIVYQTQVQDNRCMDRRFLPAKSKKLI
ALASFPGAGNTWARHLIELATGFYTGSYYFDGSLYNKGFKGERDHWRSGRTICIKTHESGQKEIEAFDAA
ILLIRNPYKALMAEFNRKYGGHIGFAAHAHWKGKEWPEFVRNYAPWWATHTLDWLKFGKTVLVVHFEDLK
QDLFTQLGRMVSLLGVAVREDRLLCVESQKDGNFKRSGLRKLEYDPYTAEMRRTIAAYIRMVDTALRSRN
LTGVPDAYGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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