NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16859.1 Public Mus musculus 2 Acss1 23 108 98 CCDS HistoryNCBI Gene:68738Re-query CCDS DB by CCDS ID:16859.1Re-query CCDS DB by GeneID:68738See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028944.3 ENSMUSP00000028944.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028944.3Link to Ensembl Protein Viewer:ENSMUSP00000028944.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028944Re-query CCDS DB by Protein ID:ENSMUSP00000028944
Original member Current member NCBI NM_080575.2 NP_542142.1 Accepted alive Link to Nucleotide Sequence:NM_080575.2Link to Protein Sequence:NP_542142.1Re-query CCDS DB by Nucleotide ID:NM_080575Re-query CCDS DB by Protein ID:NP_542142Link to BLAST:NP_542142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542142.1 682 Q99NB1 682 100% 0 0

Chromosomal Locations for CCDS 16859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150619613 150619792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150621514 150621632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150624799 150624862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150624990 150625117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150625766 150625892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150626213 150626325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150627277 150627369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150628494 150628631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150629746 150629893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150637847 150637999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150638364 150638539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150642712 150642911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150659836 150659932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150667885 150668197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGGCGGCGCGCAGCCTCGGCAGCGGTGTGGGGCGACTGCTGCGTGGCCTGCAAGGGCGCTCTGGACAAT
CGGGGTGGTCACTGAGCGTGTCCCGCTCGACCGCCACCCGACTCCCGGGCTGCGTTCCTGCAGCAGCGCA
ACCAGGCTCGTACCCCGCGTTGAGCGCTCAGGCAGCCCAGGAGCCGGCCGCCTTCTGGGGGCCGCTGGCC
CGTGACACACTAGTTTGGGACACTCCTTACCATACTGTCTGGGACTGTGACTTCAGGACGGGCAAGATCG
GCTGGTTCCTGGGAGGCCAGTTGAATGTGTCTGTCAACTGCCTGGATCAGCATGTGCAGAAGTCTCCTGA
GACCATAGCTTTGATCTGGGAGAGAGATGAACCTGGGACAGAAGTGAGAATCACTTACAGGGAGCTTCTG
GAGACCACATGCCGCCTGGCCAATACACTGAAGAGACATGGAGTGCACCGAGGGGACCGTGTGGCCATCT
ACATGCCTGTGTCCCCACTGGCTGTGGCAGCAATGCTGGCCTGTGCCAGGATTGGAGCTATCCACACAGT
GGTATTTGCTGGCTTTAGTGCAGAGTCCTTGGCTGGGAGGATCAATGATGCCAAATGCAAGGCTGTTATC
ACCTTCAACCAAGGACTCAGGGGAGGGCGTGTGGTGGAGCTGAAGAAAATAGTGGATGAAGCTGTGAAGA
GCTGCCCAACAGTCCAGCATGTCCTGGTGGCTCACAGGACGGACACCAAGGTTCCCATGGGGAGTCTGGA
TATCCCCCTTGAACAGGAGATGGCCAAGGAGGCCCCTGTTTGCACCCCTGAGAGCATGAGCAGTGAAGAC
ATGCTCTTTATGCTCTACACCTCAGGGAGCACCGGGACACCCAAGGGACTCGTTCATACACAGGCAGGCT
ATCTACTGTATGCCGCCATGACGCACAAGCTCGTGTTTGACTACCAGCCAGGTGATGTCTTTGGCTGTGT
GGCTGACATCGGTTGGATCACAGGACACAGCTATGTGGTGTATGGACCCCTCTGCAATGGAGCTACCACA
GTCCTTTTTGAGAGCACCCCAGTTTACCCTGATGCTGGTCGTTACTGGGAGACAGTGCAGAGGCTAAAGA
TCAACCAGTTCTATGGTGCCCCGACAGCTGTCCGGCTGCTGCTGAAGTATGGGGATGCCTGGGTGAAAAA
GTATGACCGCTCTTCCCTGCGCACACTGGGGTCAGTGGGAGAGCCTATCAACCACGAAGCCTGGGAGTGG
CTCCACAAAGTCGTGGGTGATGGCAGATGTACACTGGTGGACACTTGGTGGCAAACGGAAACTGGAGGCA
TCTGCATTGCACCACGGCCCTCGGAAGATGGGGCAGAGATCCTCCCGGGCATGGCCATGAGGCCGTTTTT
TGGCATCGTTCCTGTACTCATGGATGAGAAGGGCAATGTTTTGGAGGGTGGAGATGTCTCTGGGGCCTTG
TGTATTTCCCAAGCTTGGCCAGGCATGGCAAGGACCATCTATGGTGACCACCAGAGGTTCGTAGATGCCT
ACTTCAGAGCGTACCCAGGTTATTACTTCACTGGAGACGGAGCTCACCGGACAGAGGGTGGCTATTACCA
GATCACGGGGCGCATGGATGATGTCATCAATATCAGTGGTCATCGCCTGGGGACTGCAGAGATTGAGGAT
GCAATGGCTGACCATCCCGCTGTTCCAGAGACTGCTGTCATTGGGTACCCTCATGATATCAAAGGAGAAG
CTGCATTTGCCTTCATTGTGCTGAAAGATAACATCAGTGATGAGAACATGGTAGTGAATGAACTCAAATT
GTCGGTGGCCACCAAGATCGCCAAGTATGCTGTGCCTGACCAGATCCTGGTGGTGAAGCGTCTCCCCAAA
ACCAGATCTGGGAAAGTGATGAGGAGACTACTGAGGAAGATCATCACCAGCAGGGGACAGGATCTAGGGG
ACACCACTACCCTGGAGGACCCCAGCGTCATCACAGAAATCTTGAGTGCCTTCCAGAAGTATGAAGAGCA
GCGGGCTGCTACCAACTGA

Translation (682 aa):
MAARSLGSGVGRLLRGLQGRSGQSGWSLSVSRSTATRLPGCVPAAAQPGSYPALSAQAAQEPAAFWGPLA
RDTLVWDTPYHTVWDCDFRTGKIGWFLGGQLNVSVNCLDQHVQKSPETIALIWERDEPGTEVRITYRELL
ETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVI
TFNQGLRGGRVVELKKIVDEAVKSCPTVQHVLVAHRTDTKVPMGSLDIPLEQEMAKEAPVCTPESMSSED
MLFMLYTSGSTGTPKGLVHTQAGYLLYAAMTHKLVFDYQPGDVFGCVADIGWITGHSYVVYGPLCNGATT
VLFESTPVYPDAGRYWETVQRLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSVGEPINHEAWEW
LHKVVGDGRCTLVDTWWQTETGGICIAPRPSEDGAEILPGMAMRPFFGIVPVLMDEKGNVLEGGDVSGAL
CISQAWPGMARTIYGDHQRFVDAYFRAYPGYYFTGDGAHRTEGGYYQITGRMDDVINISGHRLGTAEIED
AMADHPAVPETAVIGYPHDIKGEAAFAFIVLKDNISDENMVVNELKLSVATKIAKYAVPDQILVVKRLPK
TRSGKVMRRLLRKIITSRGQDLGDTTTLEDPSVITEILSAFQKYEEQRAATN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH