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Report for CCDS24029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24029.1 Public Mus musculus 10 Csnk1g2 23 108 98 CCDS HistoryNCBI Gene:103236Re-query CCDS DB by CCDS ID:24029.1Re-query CCDS DB by GeneID:103236See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079773.13 ENSMUSP00000078706.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079773.13Link to Ensembl Protein Viewer:ENSMUSP00000078706.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079773Re-query CCDS DB by Protein ID:ENSMUSP00000078706
Original member Current member NCBI NM_134002.2 NP_598763.1 Accepted alive Link to Nucleotide Sequence:NM_134002.2Link to Protein Sequence:NP_598763.1Re-query CCDS DB by Nucleotide ID:NM_134002Re-query CCDS DB by Protein ID:NP_598763Link to BLAST:NP_598763.1

Chromosomal Locations for CCDS 24029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80634455 80634641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80637888 80637928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638010 80638309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638394 80638628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638706 80638791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638880 80638964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80639085 80639233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80639580 80639663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80639768 80639874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80640022 80640076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATGTCCAAAACCGGCACGA
GTCGGAGCAACCACGGCGTCCGCAGTTCGGGGACCAGCTCAGGGGTCCTGATGGTGGGCCCAAACTTCCG
AGTCGGCAAGAAGATAGGCTGTGGGAACTTCGGGGAGCTTCGCCTAGGAAAGAATCTGTATACAAATGAG
TACGTGGCTATCAAGCTGGAGCCCATCAAGTCCCGGGCCCCACAGCTGCACCTGGAGTACCGCTTTTACA
AGCAGCTCAGCACGACAGGTGAGGCGGACTCGGGTACGGGGCCAGCACTCCTAGGCCAGCAGTGGCTCCG
GACACCCAGCATGGATGTTTCCTTCGCAGAGGGCGTCCCTCAGGTCTACTACTTCGGCCCTTGTGGGAAG
TACAACGCCATGGTGCTGGAGCTGCTGGGGCCCAGCCTGGAGGACCTTTTCGACCTGTGCGACCGCACCT
TCACGCTGAAGACGGTGCTGATGATCGCCATCCAGCTGATCACGCGCATGGAGTACGTGCACACCAAGAG
CCTCATCTACCGTGACGTGAAGCCCGAGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCC
ATCCACATCATCGACTTTGGGCTGGCCAAGGAGTACATCGACCCTGAGACTAAGAAGCACATCCCATATC
GCGAGCACAAGAGCCTGACAGGCACTGCGCGCTACATGAGCATCAACACGCACTTGGGCAAAGAGCAGAG
CCGCCGGGATGACCTGGAGGCGCTGGGACACATGTTCATGTACTTCCTGCGCGGCAGTCTGCCCTGGCAG
GGGCTCAAGGCAGACACGCTGAAGGAGCGCTACCAGAAGATTGGAGACACCAAGCGTGCCACACCAATCG
AGGTGCTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTATTTGCGCTATGTGCGGCGCCTAGACTTTTT
TGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCACTGACCTCTTTGACCGCAGCGGCTACGTGTTT
GACTACGAGTATGACTGGGCCGGCAAGCCCCTGCCGACACCCATCGGCACCGTCCACCCTGACGTGCCCT
CCCAGCCACCACATCGCGACAAAGCTCAGCTCCACACCAAGAACCAGGCGCTCAACTCCACTAATGGAGA
GCTGAACACAGACGACCCCACCGCGGGCCACTCCAACGCCCCCATCGCGGCCCCCGCAGAAGTAGAGGTG
GCAGATGAAACAAAGTGCTGCTGCTTCTTCAAGAGGAGAAAGAGAAAATCGCTGCAGCGACATAAGTGA

Translation (442 aa):
MDFDKKGGKGELEEGRRMSKTGTSRSNHGVRSSGTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNE
YVAIKLEPIKSRAPQLHLEYRFYKQLSTTGEADSGTGPALLGQQWLRTPSMDVSFAEGVPQVYYFGPCGK
YNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGSKRQHS
IHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQ
GLKADTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGYVF
DYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLHTKNQALNSTNGELNTDDPTAGHSNAPIAAPAEVEV
ADETKCCCFFKRRKRKSLQRHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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