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Report for CCDS18599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18599.1 Public Mus musculus 4 Col9a2 23 108 98 CCDS HistoryNCBI Gene:12840Re-query CCDS DB by CCDS ID:18599.1Re-query CCDS DB by GeneID:12840See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030372.5 ENSMUSP00000030372.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030372.5Link to Ensembl Protein Viewer:ENSMUSP00000030372.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030372Re-query CCDS DB by Protein ID:ENSMUSP00000030372
Original member Current member NCBI NM_007741.2 NP_031767.2 Accepted alive Link to Nucleotide Sequence:NM_007741.2Link to Protein Sequence:NP_031767.2Re-query CCDS DB by Nucleotide ID:NM_007741Re-query CCDS DB by Protein ID:NP_031767Link to BLAST:NP_031767.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031767.2 688 Q07643 688 99.4186% 0 4

Chromosomal Locations for CCDS 18599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121039715 121039786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121040965 121041039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121042294 121042329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121042416 121042478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121043696 121043749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121043862 121043897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121043995 121044018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121044275 121044328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121044665 121044718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121044823 121044870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121044999 121045055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121045141 121045194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121045484 121045537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121045926 121045979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121046070 121046123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121046229 121046282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121049662 121049715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121050076 121050129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121050355 121050408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121051214 121051258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121051651 121051704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121051968 121052021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121052227 121052280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121052358 121052429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121052581 121052616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121052753 121052797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121052891 121052923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121053058 121053204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121053439 121053493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121053770 121053958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121054253 121054330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121054596 121054795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGACCGCCGTGCCCGCGCCCCGCAGCCTGTTCGTTCTCCTCCAGGTGCTGTGGCTCGCCCTGGCTCAGA
TCAGAGGTCCACCAGGGGAGCCGGGTCCTCCAGGGCCACCAGGGCCACCAGGAGTGCCTGGTTCAGATGG
CATCGACGGTGACAAGGGGCCTCCAGGTAAAGTTGGTCCTCCGGGATCCAAAGGAGAGCCTGGCAAACCT
GGCCCAGATGGTCCAGATGGGAAACCTGGCATTGATGGTTTAATGGGAGCCAAGGGAGAGCCTGGTCCCG
TGGGGACCCCTGGAGTCAAGGGCCAGCCTGGGCTCCCAGGGCCCCCTGGCCTGCCGGGCCCTGGTTTTGC
TGGACCTCCCGGACCCCCTGGACCTGTTGGCCTCCCTGGTGAGATTGGAACCCCAGGCCCCAAGGGGGAT
CCAGGACCAGAGGGACCATCAGGGCCCCCAGGGCCCCCTGGGAAACCAGGCCGACCAGGAACCATCCAGG
GCTTGGAAGGGAGTGCGGATTTCTTGTGTCCAACCAACTGTCCAGCTGGTGTGAAGGGTCCTCAGGGTTT
GCAAGGAGTGAAGGGTCATCCAGGCAAACGGGGGATTCTGGGTGATCCTGGTCGCCAGGGGAAGCCAGGT
CCCAAGGGAGATGTGGGTGCCTCTGGAGAGCAAGGCATCCCTGGACCACCGGGCCCCCAAGGCATCAGGG
GCTACCCGGGCATGGCAGGACCCAAGGGAGAGATGGGTCCTCGTGGCTATAAAGGCATGGTGGGCTCCAT
CGGGGCTGCTGGGCCACCGGGTGAAGAAGGCCCAAGAGGGCCACCAGGCCGAGCCGGTGAGAAGGGGGAT
GTGGGGAGCCAAGGTGCCAGAGGACCCCAGGGGATAACAGGCCCAAAGGGAACAACCGGTCCACCAGGCA
TTGATGGCAAGGATGGGACCCCAGGCATTCCTGGCATGAAGGGCAGTGCAGGACAAGTGGGACGGCCAGG
AAGCCCAGGCCACCAGGGCTTAGCGGGTGTGCCGGGTCAGCCTGGAACAAAAGGAGGTCCTGGAGACAAG
GGTGAACCAGGCCAGCAGGGCTTGCCGGGAGTCTCTGGTCCCCCTGGGAAAGAAGGGGAGCCAGGGCCTC
GAGGAGAAATTGGTCCACAGGGCATCATGGGACAGAAGGGTGACCAGGGCGAGAGGGGGCCAGTGGGACA
GCCAGGCCCTCAAGGACGACAGGGCCCCAAAGGAGAGCAGGGCCCTCCAGGAATTCCAGGACCCCAAGGC
TTGCCAGGCATCAAAGGAGATAAGGGTTCCCCAGGGAAGACCGGGCCCCGAGGCGGAGTGGGTGACCCGG
GGGTGGCCGGCCTCCCGGGAGAGAAAGGAGAGAAGGGCCAATCAGGCGAGCCAGGGCTTAAGGGACAGCA
AGGAGTCCGTGGAGAGACCGGCTACCCCGGCCCCAGCGGAGATGCCGGTGCCCCAGGAGTGCAGGGCTAC
CCCGGGCTTCCCGGGCCCCGAGGACTGGTGGGAGATCGAGGCGTGCCAGGACAACCCGGGAGACAGGGTG
TGGTGGGCCGAGCCGCCAGTGACCAGCACATCGTGGATGTGGTGCTGAAGATGATTCAAGAGCAACTTGC
TGAGGTAGCTGTGAGTGCCAAGCGAGAAGCCCTGGGTGCAGCAGGGATGGTGGGCCTTCCAGGACCTCCT
GGGCCCCCTGGATATCCAGGCAAACAGGGGCCCAATGGGCATCCCGGCCCCCGAGGCATTCCTGGCATCG
TGGGAGCAGTGGGTCAGATTGGCAACACTGGACCCAAGGGAAAGCGTGGAGAGAAGGGGGATCGAGGAGA
AATGGGTCGTGGCCATCCCGGGATGCCTGGGCCCCCAGGGATCCCAGGTCTTCCTGGCCGGCCTGGCCAG
GCAATCAATGGCAAGGATGGGGACCGAGGATCCCCAGGGGCTCCAGGAGAGGCTGGGAGACCTGGCCGGC
CAGGCCCAGTGGGGCTACCAGGTTTCTGTGAGCCTGCCGCATGCCTGGGGGCTTCAGCCTATACCTCTGC
TCGCCTCACAGAGCCTGGGTCCATCAAGGGGCCATGA

Translation (688 aa):
MTAVPAPRSLFVLLQVLWLALAQIRGPPGEPGPPGPPGPPGVPGSDGIDGDKGPPGKVGPPGSKGEPGKP
GPDGPDGKPGIDGLMGAKGEPGPVGTPGVKGQPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGTPGPKGD
PGPEGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPAGVKGPQGLQGVKGHPGKRGILGDPGRQGKPG
PKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGEMGPRGYKGMVGSIGAAGPPGEEGPRGPPGRAGEKGD
VGSQGARGPQGITGPKGTTGPPGIDGKDGTPGIPGMKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDK
GEPGQQGLPGVSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQG
LPGIKGDKGSPGKTGPRGGVGDPGVAGLPGEKGEKGQSGEPGLKGQQGVRGETGYPGPSGDAGAPGVQGY
PGLPGPRGLVGDRGVPGQPGRQGVVGRAASDQHIVDVVLKMIQEQLAEVAVSAKREALGAAGMVGLPGPP
GPPGYPGKQGPNGHPGPRGIPGIVGAVGQIGNTGPKGKRGEKGDRGEMGRGHPGMPGPPGIPGLPGRPGQ
AINGKDGDRGSPGAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSARLTEPGSIKGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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