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Report for CCDS50430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50430.1 Public Mus musculus 19 Rbp4 23 108 98 CCDS HistoryNCBI Gene:19662Re-query CCDS DB by CCDS ID:50430.1Re-query CCDS DB by GeneID:19662See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025951.13 ENSMUSP00000025951.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025951.13Link to Ensembl Protein Viewer:ENSMUSP00000025951.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025951Re-query CCDS DB by Protein ID:ENSMUSP00000025951
Original member Current member NCBI NM_001159487.1 NP_001152959.1 Accepted alive Link to Nucleotide Sequence:NM_001159487.1Link to Protein Sequence:NP_001152959.1Re-query CCDS DB by Nucleotide ID:NM_001159487Re-query CCDS DB by Protein ID:NP_001152959Link to BLAST:NP_001152959.1

Chromosomal Locations for CCDS 50430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38116872 38116909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38118272 38118484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38124029 38124135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38124296 38124432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38124519 38124647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38124955 38125068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGATCCTCTGGGCTGGAGAGTTTGGCTCCACCGAGACCACCCTGAGCGGAGCTCGGAGCATAGGCGAC
GTGGGACGGCAAGGCTGACGGAGGGGCCCCGCGTGCGTTCAGGAGGCAGACTCCGGGGTGAGATGGAGTG
GGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGC
TTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACC
CCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGC
CACAGCCAAGGGACGAGTCCGTCTTCTGAGCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACA
GACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAAACG
ATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCT
GGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACA
CGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG
GTTACTGTCAAAGCAGGCCCTCCAGAAACAGTTTGTAG

Translation (245 aa):
MDPLGWRVWLHRDHPERSSEHRRRGTARLTEGPRVRSGGRLRGEMEWVWALVLLAALGGGSAERDCRVSS
FRVKENFDKARFSGLWYAIAKKDPEGLFLQDNIIAEFSVDEKGHMSATAKGRVRLLSNWEVCADMVGTFT
DTEDPAKFKMKYWGVASFLQRGNDDHWIIDTDYDTFALQYSCRLQNLDGTCADSYSFVFSRDPNGLSPET
RRLVRQRQEELCLERQYRWIEHNGYCQSRPSRNSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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