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Report for CCDS39752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39752.1 Public Mus musculus 7 Zfp28 23 108 98 CCDS HistoryNCBI Gene:22690Re-query CCDS DB by CCDS ID:39752.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081022.8 ENSMUSP00000079812.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081022.8Link to Ensembl Protein Viewer:ENSMUSP00000079812.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000081022Re-query CCDS DB by Protein ID:ENSMUSP00000079812
Original member Current member NCBI NM_175247.3 NP_780456.2 Accepted alive Link to Nucleotide Sequence:NM_175247.3Link to Protein Sequence:NP_780456.2Re-query CCDS DB by Nucleotide ID:NM_175247Re-query CCDS DB by Protein ID:NP_780456Link to BLAST:NP_780456.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780456.2 825 P10078-1 825 100% 0 0

Chromosomal Locations for CCDS 39752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6383394 6383601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6384175 6384266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6389433 6389559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6389754 6389849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6390400 6390560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6392182 6392296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6393367 6395045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGCAGGGAATGGCGAGTGTAGTGTCATGCGAACCCTGGGCCCTCCTGGGGCGTGGCGCCCTCTGCACAA
AGGCCAGGCCTGGTGGAGGTCCGGCGGCGGGGACTGTAGTTGCTCCTGGGAGCCCCGACCGGGGAAGGCC
GCGCTCCAGGAACAGCCTGGCCTCCCAGGATCAGCAAGGAGCAGTGACCTCGGGGACCGCGCACAAAGCT
CTGTTTTCCAGAGATACCAACTTCCTCCAGGAGATAAACCGCAAACAGGAAGCTGCCCCTACAGGGACTA
GACATAAAGCCAAGTCGCAGGGCTTGGTGACCTTTGGGGATGTGGCTGTAGTTTTCTCCCAGGAGGAGTG
GGAATGGCTCAACTCTGAGCAGAGGAGTCTGTACTGGAAGGTGATGCTGGACAACTACAGGAACCTAGCA
TCCCTGGGACTTTGTGCTTCTCAGCCAGATATGATCACCTCGTTGGAACAAGGAAGGGATCCCTGGATGA
TGAAAAGGAAGATGAGAAAAGGCCAGCACCTGGACTTGAAGGCCATGCAGGAGACCAAGGAGTTCCCTCC
AAAGGACTTAAGTGAGGAGACATTATTCCTGGCAGTGCTAAGAAAACAGCTCCTGCCCCATAGACCTAAG
TGCTCCATGGTACGGGCAGCCTGGGAGGGTGGTGCAGTGTTCACGACACACAGGGGCTTGAAGACCAACT
CAGGTCTGGCTAGAGACAGTCCTGCACAGCTTGTGTCAGCTCAGAGGAGTTTCTGTAAGAGTGTGACTTG
GGAGAACTGTGGTGACCGGGGCTCCGTAGGCCAGCAGTCTGTACAGGAAGCCCAGGATCTGCTTCCAAGG
CAGGACTCACATGCTGAACGGGTAACAGGCAGAACTTGGAGCACTAAACTTGAGTGCTCCACTTTCAGAG
ATCAGGATTCTGAGTGTACGTTTGAAAGGAATGAGCAAGAGACAGTCACTCCGAACAGAGCCTTCTCAGA
GGGGAGAGATGGTATGTGTATCGAATCTGGAAGATGGTTTCATTTGAACAGTTCAGACGAGAGAAGTCAT
AACTGTGACTCAGGTAAAAGTTTCTCCTCAAATCCAGTAGTTGTAAAGGAAACCGGAATCTGTTCAGGAA
AAAAACTTTTCCAATGTAATGAATGTAAGAAAACTTTCACCCAGAGCTCCTCCCTTACCGTTCACCAGAG
AATTCATACTGGAGAGAAGCCCTATAAATGCAATCAGTGTGGGAAGGCCTTCAGTGACGGGTCCTCCTTC
GCACGGCACCAGAGGTGCCATACAGGCAAGAAGCCGTACGAGTGCCCGGAGTGTGGCAAAGCTTTCATAC
AGAACACCTCGCTCGTTCGTCACTGGAGGTACTATCACACTGGGGAGAAACCCTTCGATTGCATCGACTG
TGGGAAAGCCTTCAGTGACCACATAGGGCTTAATCAACACAGGAGGATTCACACTGGAGAGAAACCATAC
ACGTGTGAAGTGTGTCACAAATCCTTTAGGTACGGCTCATCCCTCACTGTGCACCAAAGGATTCATACTG
GAGAGAAACCGTACGAGTGTGAGATTTGCAGAAAAGCCTTCAGCCACCATGCATCCCTCACTCAGCATCA
ACGAGTGCATTCTGGAGAAAAGCCTTTTAAATGTAAAGAGTGTGGGAAAGCTTTTAGGCAGAATATACAC
CTTGCTAGTCACTGGAGGATCCATACCGGGGAGAAGCCCTTTGAGTGTGGGGAATGTGGGAAATCTTTCA
GCATCAGCTCACAGCTTGCCACGCATCAGAGAATTCATACAGGAGAGAAGCCTTACGAATGTAAGGTTTG
TAGGAAAGCATTTACACAGAAGGCTCACCTTGCACAACATCAGAAGACTCATACGGGGGAGAAGCCATAC
GAGTGCAAGGAATGTGGCAAGGCCTTCAGCCAGACCACTCACCTCATTCAACACCAGAGGGTTCATACTG
GAGAGAAGCCCTATAAATGCCTGGAATGTGGGAAGGCCTTTGGTGATAACTCATCCTGTACTCAACATCG
GAGACTTCACACCGGCCAGAGGCCTTACGAGTGTGTGGAGTGTGGGAAGACATTCAAGACCAAGTCGTCC
CTTATCTGTCATCGTAGATGTCACACGGGAGAGAAACCTTATGAGTGCAGTGCATGTGGTAAAGCCTTTA
GCCACCGGCAGTCCCTTAGTGTACATCAGAGAATTCATTCGGGGAAGAAACCGTATGAATGTAAGGAATG
TCGGAAAACCTTCATCCAGATTGGACACCTTAACCAACATAAGAGAGTCCATACCGGGGAGAGAACGTAC
AACTACAAGAAGGGCAGGAGGGCCTTCAGGCAGACTGCACACTTTGCTCACCATCAGCAGATTCATTCCG
GAAAGTCACCTGCTCACCACTCTTTGCCTTCCACATCGAATCCTGTGGATCTCTTCTCCAAATTCGTCTG
GAATCCATCCTCACTGCCATCATCATAA

Translation (825 aa):
MQGMASVVSCEPWALLGRGALCTKARPGGGPAAGTVVAPGSPDRGRPRSRNSLASQDQQGAVTSGTAHKA
LFSRDTNFLQEINRKQEAAPTGTRHKAKSQGLVTFGDVAVVFSQEEWEWLNSEQRSLYWKVMLDNYRNLA
SLGLCASQPDMITSLEQGRDPWMMKRKMRKGQHLDLKAMQETKEFPPKDLSEETLFLAVLRKQLLPHRPK
CSMVRAAWEGGAVFTTHRGLKTNSGLARDSPAQLVSAQRSFCKSVTWENCGDRGSVGQQSVQEAQDLLPR
QDSHAERVTGRTWSTKLECSTFRDQDSECTFERNEQETVTPNRAFSEGRDGMCIESGRWFHLNSSDERSH
NCDSGKSFSSNPVVVKETGICSGKKLFQCNECKKTFTQSSSLTVHQRIHTGEKPYKCNQCGKAFSDGSSF
ARHQRCHTGKKPYECPECGKAFIQNTSLVRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPY
TCEVCHKSFRYGSSLTVHQRIHTGEKPYECEICRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNIH
LASHWRIHTGEKPFECGECGKSFSISSQLATHQRIHTGEKPYECKVCRKAFTQKAHLAQHQKTHTGEKPY
ECKECGKAFSQTTHLIQHQRVHTGEKPYKCLECGKAFGDNSSCTQHRRLHTGQRPYECVECGKTFKTKSS
LICHRRCHTGEKPYECSACGKAFSHRQSLSVHQRIHSGKKPYECKECRKTFIQIGHLNQHKRVHTGERTY
NYKKGRRAFRQTAHFAHHQQIHSGKSPAHHSLPSTSNPVDLFSKFVWNPSSLPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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