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Report for CCDS28342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28342.1 Public Mus musculus 16 Cbr3 23 108 98 CCDS HistoryNCBI Gene:109857Re-query CCDS DB by CCDS ID:28342.1Re-query CCDS DB by GeneID:109857See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039620.6 ENSMUSP00000047712.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039620.6Link to Ensembl Protein Viewer:ENSMUSP00000047712.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039620Re-query CCDS DB by Protein ID:ENSMUSP00000047712
Original member Current member NCBI NM_173047.3 NP_766635.1 Accepted alive Link to Nucleotide Sequence:NM_173047.3Link to Protein Sequence:NP_766635.1Re-query CCDS DB by Nucleotide ID:NM_173047Re-query CCDS DB by Protein ID:NP_766635Link to BLAST:NP_766635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766635.1 277 Q8K354 277 100% 0 0

Chromosomal Locations for CCDS 28342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 93683325 93683613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93685047 93685154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93690328 93690764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGTCGTCCTGCAGCCGCGTGGCCCTGGTAACTGGGGCTAACAAAGGCATCGGCTTTGCGATCACGCGTG
ACCTGTGTCGGAAATTCTCCGGGGACGTGGTGCTCACGGCGCGGGACGAGGCGCGGGGCCGCGCGGCGGT
GCAGCAGCTGCAGGCGGAGGGCCTGAGCCCACGCTTCCACCAGCTGGACATCGACGACCCGCAGAGCATC
CGTGCGCTGCGCGACTTTCTGCGCAAGGAGTACGGGGGACTTAACGTGCTGGTCAACAACGCGGGCATCG
CCTTTAGAATGGATGACCCAACACCCTTCGACATTCAAGCTGAGGTGACACTGAAGACGAACTTTTTTGC
CACTAGAAATGTCTGCACTGAGTTACTGCCTATAATGAAACCACATGGTAGAGTGGTGAACATCAGCAGT
CTGCAGGGGTTAAAAGCCCTTGAGAACTGCAGGGAAGATCTTCAGGAAAAGTTCCGATGTGACACACTTA
CCGAGGTGGACCTGGTCGACCTCATGAAAAAGTTTGTGGAGGATACAAAAAATGAAGTCCATGAGAGGGA
AGGTTGGCCAGACTCGGCTTACGGGGTGTCGAAGCTGGGGGTGACAGTCCTTACGAGGATCCTGGCCCGG
CAGCTGGATGAAAAGAGGAAAGCGGACAGGATTCTGCTCAATGCCTGCTGCCCGGGATGGGTGAAGACCG
ACATGGCGAGGGACCAGGGCTCCCGGACCGTGGAAGAGGGGGCCGAAACCCCCGTTTACTTGGCTCTCCT
GCCTCCAGATGCCACTGAACCTCACGGCCAGCTAGTCCGTGACAAAGTTGTGCAAACTTGGTGA

Translation (277 aa):
MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDPQSI
RALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRNVCTELLPIMKPHGRVVNISS
LQGLKALENCREDLQEKFRCDTLTEVDLVDLMKKFVEDTKNEVHEREGWPDSAYGVSKLGVTVLTRILAR
QLDEKRKADRILLNACCPGWVKTDMARDQGSRTVEEGAETPVYLALLPPDATEPHGQLVRDKVVQTW


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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