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Report for CCDS53936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53936.1 Public Homo sapiens 15 MAPDA 24 110 108 CCDS HistoryNCBI Gene:161823Re-query CCDS DB by CCDS ID:53936.1Re-query CCDS DB by GeneID:161823See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422466.6 ENSP00000398744.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422466.6Link to Ensembl Protein Viewer:ENSP00000398744.3Re-query CCDS DB by Nucleotide ID:ENST00000422466Re-query CCDS DB by Protein ID:ENSP00000398744
Original member Current member EBI ENST00000428046.7 ENSP00000413074.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428046.7Link to Ensembl Protein Viewer:ENSP00000413074.3Re-query CCDS DB by Nucleotide ID:ENST00000428046Re-query CCDS DB by Protein ID:ENSP00000413074
Original member Current member NCBI NM_001159280.3 NP_001152752.1 Accepted alive Link to Nucleotide Sequence:NM_001159280.3Link to Protein Sequence:NP_001152752.1Re-query CCDS DB by Nucleotide ID:NM_001159280Re-query CCDS DB by Protein ID:NP_001152752Link to BLAST:NP_001152752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152752.1 328 Q6DHV7-3 328 100% 0 0

Chromosomal Locations for CCDS 53936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 43335108 43335170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43335696 43335826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43336626 43336686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43340265 43340352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43342994 43343075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43345854 43345980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43348907 43349045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43350941 43351041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43351751 43351945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGATAGAGGCAGAAGAGCAACAGCCTTGCAAGACAGACTTCTATTCTGAATTGCCAAAAGTGGAACTTC
ATGCCCACTTGAATGGATCCATTAGTTCTCATACCATGAAGAAATTAATAGCCCAGAAGCCAGATCTTAA
AATCCACGATCAGATGACTGTGATTGACAAGGGAAAGAAAAGAACTTTGGAAGAATGTTTCCAGATGTTT
CAAACTATTCATCAGCTTACTAGTAGCCCTGAAGATATTCTAATGGTCACAAAAGATGTCATAAAAGAAT
TTGCAGATGACGGCGTCAAGTACCTGGAACTAAGGAGCACACCCAGAAGAGAAAATGCTACTGGAATGAC
TAAAAAGACTTATGTGGAATCTATACTTGAAGGTATAAAACAGTCCAAACAAGAAAACTTGGACATTGAT
GTTAGGTATTTGATAGCAGTTGACAGAAGAGGTGGCCCTTTAGTAGCCAAGGAGACTGTAAAACTTGCCG
AGGAGTTCTTCCTTTCTACTGAGGGTACAGTTCTTGGCCTTGACCTCAGTGGAGACCCTACTATTCCAAA
CCAAAAAAAAGAAACACAAATACTCCTGGATCTGCTTCCTGACAGAATCGGGCATGGAACATTTCTCAAC
TCCGGTGAGGGAGGATCCCTGGATCTGGTGGACTTTGTGAGGCAACATCGGATACCACTGGAACTCTGTT
TGACCTCAAACGTCAAAAGTCAGACAGTTCCATCTTATGACCAGCACCATTTCGGATTCTGGTACAGCAT
TGCCCATCCTTCTGTGATCTGTACTGATGATAAGGGTGTTTTTGCAACACACCTTTCTCAAGAGTACCAG
CTGGCAGCTGAAACATTTAATTTGACCCAGTCTCAGGTGTGGGATCTGTCTTATGAATCCATCAACTACA
TCTTTGCTTCTGACAGCACCAGATCTGAACTGAGGAAGAAATGGAATCACCTGAAGCCCAGAGTGTTACA
TATTTAA

Translation (328 aa):
MIEAEEQQPCKTDFYSELPKVELHAHLNGSISSHTMKKLIAQKPDLKIHDQMTVIDKGKKRTLEECFQMF
QTIHQLTSSPEDILMVTKDVIKEFADDGVKYLELRSTPRRENATGMTKKTYVESILEGIKQSKQENLDID
VRYLIAVDRRGGPLVAKETVKLAEEFFLSTEGTVLGLDLSGDPTIPNQKKETQILLDLLPDRIGHGTFLN
SGEGGSLDLVDFVRQHRIPLELCLTSNVKSQTVPSYDQHHFGFWYSIAHPSVICTDDKGVFATHLSQEYQ
LAAETFNLTQSQVWDLSYESINYIFASDSTRSELRKKWNHLKPRVLHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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