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Report for CCDS56650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56650.1 Public Mus musculus 1 Fmo6 23 108 98 CCDS HistoryNCBI Gene:226565Re-query CCDS DB by CCDS ID:56650.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178465.2 ENSMUSP00000136378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178465.2Link to Ensembl Protein Viewer:ENSMUSP00000136378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178465Re-query CCDS DB by Protein ID:ENSMUSP00000136378
Original member Current member NCBI NM_001178038.1 NP_001171509.1 Accepted alive Link to Nucleotide Sequence:NM_001178038.1Link to Protein Sequence:NP_001171509.1Re-query CCDS DB by Nucleotide ID:NM_001178038Re-query CCDS DB by Protein ID:NP_001171509Link to BLAST:NP_001171509.1

Chromosomal Locations for CCDS 56650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162916723 162917065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162918197 162918269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162920311 162920666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162922659 162922858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162924292 162924434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162926088 162926250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162929882 162930070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162936995 162937126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGGCAAGAAAGTGGCCATCGTGGGAGCTGGAGTAAGTGGCTTGGCCGCAATACGGTGCTGTCTGGAGG
AA
GGGCTGGACCCCATCTGCTTTGAAAGGAGCATCGATGTTGGAGGGCTATGGAAATTCTCGAGCCACGC
A
GAGGAAGGAAGGGCCAGCATTTACCAGTCGGTCTTCACCAACTCTTCCAAAGAGATGATGTGTTTTCCA
GAC
TTCCCCTATCCTGATGATTTCCCGAACTACATGCACCACAGCAAACTCCAGGAATACATCACGTCGT
TC
GCTCAGAAGAAGGGTCTTCTGAGATACATACAGTTTGAGACCCTGGTTTCTAGTATAAAGAAATGTTC
T
AGCTTCTTGACCACTGGCCAGTGGGTGGTTGTTACTGAAAAGGAAGGCAAGCAAGAATCTGTGCTCTTT
GAT
GCTGTGATGATCTGTTCAGGACATCACGTGTACCCCAACATGCCAACTGACTCTTTTCCCGGTCTAG
AG
CACTTTCGAGGCAAGTGCCTACACAGCCGGGATTACAAGGGCCCAGGAGCCTTCCAGGGAAAGAAAGT
C
CTTGTGATTGGCCTGGGAAACTCAGCATCCGACATTGCTGTTGAGCTCAGTCGTCTGGCTACACAGGTC
ATC
ATCAGCACCAGAAGCGGTTCCTGGATCATGAGTCGAGTTTGGAATGATGGGTATCCTTGGGATATGG
TA
TATGTTACCCGATTCACATCCTTCCTCCGGAATATCCTTCCTTCTTTTGTCTCTGACTGGTTATATAT
C
AAGAAGATGAACACATGGTTTAAGCATGAGAACTACGGCCTGATGCCTTTAAATGGCCCTCTCAGGAAA
GAG
CCCGTGTTCAATGATGAGCTCCCATCCCGCATCCTGTGTGGCATGGTGACCATCAAGCCCATCGTGA
CC
AAGTTCACAGAGACCTCCGCTGTGTTTGAGGATGGGACTGTGTTTGAGGCCATTGACTGTGTCATCTT
C
GCCACAGGCTATGGTTATGCCTACCCCTTCCTGGATGACTCCATCATCAAAAGCAGAAATAATGAGGTC
ACT
TTGTACAAAGGCATCTTCCCTCCTCAACTAGAGAAACCAACCATGGCAGTGATTGGCCTGGTCCAGT
CC
CTGGGTGCTGCCATTCCTACAGCTGACCTCCAGGCACGCTGGGCTGCTAAAGTGTTTACAAACACATG
T
GTCCTGCCAACTACAAATGAAATGATGGATGACATTGATGAGAAAATGGGCAAGAAACTCAAGTGGTTT
GGC
CAGAGCCACACTCTGCAGACAGATTATATCACATACATGGATGAGCTGAGCTCCTTTATAGGAGCCA
AG
CCTAACATACCCTGGCTCTTCTTGACTGACCCCCAGCTGGCCCTGGAAGTGTACTTTGGCCCTTGTAG
T
CCTTATCAGTTTCGATTGATGGGACCAGGAAAGTGGGACGGAGCTAGAAATGCCATCCTAACTCAATGG
AAA
CGGACGGTGAAGCCAACCAGGACAAGGGCTGTCGGCGAAGCACAAAGACCACGTCACCTTTATGACT
TG
CTACGAATGCTTTTCTTCCCAGTGTTCTTTCTGGCTGTTTTGCTCACCTTTTATTAA


Translation (532 aa):
MGKKVAIVGAGVSGLAAIRCCLEEGLDPICFERSIDVGGLWKFSSHAEEGRASIYQSVFTNSSKEMMCFP
D
FPYPDDFPNYMHHSKLQEYITSFAQKKGLLRYIQFE
TLVSSIKKCSSFLTTGQWVVVTEKEGKQESVLF
D
AVMICSGHHVYPNMPTDSFP
GLEHFRGKCLHSRDYKGPGAFQGKKVLVIGLGNSASDIAVELSRLATQV
I
ISTRSGSWIMSRVWNDGYPWDMVYVTRFTSFLRNILPSFVSDWLYIKKMNTWFKHENYGLMPLN
GPLRK
E
PVFNDELPSRILCGMVTIKPIVTKFTETSAVFEDGTVFEAIDCVIFATGYGYAYPFLDDSIIKSRNNEV
T
LYKGIFPPQLEKPTMAVIGLVQSLGAAIPTADLQARWAAKVFT
NTCVLPTTNEMMDDIDEKMGKKLKWF
G
QSHTLQTDYITYMDELSSFIGAKPNIPWLFLTDPQLALEVYFGPCSPYQFRLMGPGKWDGARNAILTQW
K
RTVKPTRTRAVGEAQRPRHLYDLLRMLFFPVFFLAVLLTFY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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