NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10522.1 Public Homo sapiens 16 SEPTIN12 24 110 108 CCDS HistoryNCBI Gene:124404Re-query CCDS DB by CCDS ID:10522.1Re-query CCDS DB by GeneID:124404See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10522.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268231.13 ENSP00000268231.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268231.13Link to Ensembl Protein Viewer:ENSP00000268231.8Re-query CCDS DB by Nucleotide ID:ENST00000268231Re-query CCDS DB by Protein ID:ENSP00000268231
Original member Current member NCBI NM_144605.5 NP_653206.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144605.5Link to Protein Sequence:NP_653206.2Re-query CCDS DB by Nucleotide ID:NM_144605Re-query CCDS DB by Protein ID:NP_653206Link to BLAST:NP_653206.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653206.2 358 Q8IYM1-1 358 100% 0 0

Chromosomal Locations for CCDS 10522.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4777797 4777998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4778086 4778137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4779690 4779786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4783462 4783557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4783649 4783766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4783931 4784068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4785807 4785888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4785980 4786105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4787480 4787645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGACCCCCTGAGGCGCTCCCCCTCTCCCTGCCTGTCCTCGCAGCCCTCCAGCCCCAGCACCCCACCCT
GCGAGATGCTTGGTCCTGTGGGCATTGAGGCTGTGCTGGACCAGCTGAAGATCAAGGCTATGAAGATGGG
GTTTGAGTTCAACATCATGGTGGTGGGGCAAAGCGGGCTGGGCAAGTCCACGATGGTGAACACGCTGTTC
AAGTCCAAAGTGTGGAAGTCAAACCCACCGGGCTTGGGGGTGCCCACACCCCAGACGCTGCAGCTGCATT
CACTGACCCATGTCATAGAGGAGAAGGGTGTGAAGCTGAAGCTGACGGTGACGGACACGCCCGGCTTCGG
GGACCAGATCAACAATGACAACTGCTGGGACCCCATCCTGGGCTACATCAACGAGCAATACGAGCAGTAC
CTGCAGGAGGAGATCCTCATCACCCGCCAGCGCCACATCCCAGACACCCGGGTGCACTGCTGCGTGTACT
TTGTACCACCCACTGGGCACTGCCTGCGGCCCCTGGACATTGAGTTCCTGCAGCGGCTGTGCCGGACTGT
GAATGTGGTGCCCGTGATTGCCAGGGCCGACAGCCTGACCATGGAGGAGCGAGAGGCCTTCAGGCGCAGG
ATCCAGCAGAACCTGAGGACCCACTGCATCGACGTCTACCCCCAGATGTGCTTTGACGAGGACATCAATG
ACAAAATCCTCAACAGCAAGTTACGGGACCGAATCCCTTTTGCCGTGGTAGGGGCTGACCAAGAGCACCT
GGTGAACGGGAGGTGTGTCCTGGGCCGGAAGACCAAGTGGGGCATCATTGAAGTGGAGAACATGGCGCAC
TGTGAATTTCCTCTCCTGAGAGACCTGCTTATCCGCTCCCACCTCCAAGACCTGAAGGACATAACCCACA
ACATCCACTATGAGAACTACCGCGTCATCAGACTCAATGAAAGCCACCTGCTGCCCCGCGGGCCCGGCTG
GGTGAACCTGGCCCCGGCCTCCCCAGGACAGCTGACCACCCCCCGGACCTTCAAGGTCTGCAGGGGGGCC
CATGACGATTCTGATGATGAGTTCTGA

Translation (358 aa):
MDPLRRSPSPCLSSQPSSPSTPPCEMLGPVGIEAVLDQLKIKAMKMGFEFNIMVVGQSGLGKSTMVNTLF
KSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNCWDPILGYINEQYEQY
LQEEILITRQRHIPDTRVHCCVYFVPPTGHCLRPLDIEFLQRLCRTVNVVPVIARADSLTMEEREAFRRR
IQQNLRTHCIDVYPQMCFDEDINDKILNSKLRDRIPFAVVGADQEHLVNGRCVLGRKTKWGIIEVENMAH
CEFPLLRDLLIRSHLQDLKDITHNIHYENYRVIRLNESHLLPRGPGWVNLAPASPGQLTTPRTFKVCRGA
HDDSDDEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH