NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52308.1 Public Mus musculus 7 Ccdc89 23 108 98 CCDS HistoryNCBI Gene:70054Re-query CCDS DB by CCDS ID:52308.1Re-query CCDS DB by GeneID:70054See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061391.8 ENSMUSP00000060309.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061391.8Link to Ensembl Protein Viewer:ENSMUSP00000060309.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061391Re-query CCDS DB by Protein ID:ENSMUSP00000060309
Original member Current member NCBI NM_027298.1 NP_081574.1 Accepted alive Link to Nucleotide Sequence:NM_027298.1Link to Protein Sequence:NP_081574.1Re-query CCDS DB by Nucleotide ID:NM_027298Re-query CCDS DB by Protein ID:NP_081574Link to BLAST:NP_081574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081574.1 370 Q9DA73 370 100% 0 0

Chromosomal Locations for CCDS 52308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 90426584 90427696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGCCGCAGGAGGAGAAGACTCTTAGGATGGATACCCCACCCCCCGACGAGATCTTAGGAAAACAAAACG
AAAACCTGCAAAACCAGGATGAGGAATTGGGGTTTAAGGAAATGGACGGTCTGAGAGAAGCTTTGGCCAA
CCTTAGGGGACTGTCTGAGGAGGAGAAGGGCGAGAAGGCAATGCTTCGCTCCCGCATCCAAGAGCAATCC
CAGCTCATCTGCATCCTGAAACGCAGATCCGACGAGGCCCTGGAACGCTGCCAGATCTTAGAACTGCTCA
ACTCGGAGCTGGAGGAGAAGAGGCTGCAGGAGATGGAGAAGTTGAAGGCCCAGAGTGAGCACATCCAAAA
GCTGGAGAATCACTTCATGATCCTGGCATCCAACCACGAGCAGATGATTCGCTTCAAGGATGCGCACAAG
AGTGAAAACGTCAAGCTGAAAGAGGAGAATGCGAGGCTGAGGCAGGAAAACAACAGCCTCTTCAGCCAGG
CTCTGAAAGACCAGGAGGCTAAGGTACTGGAGCTCACTACACTCAACAAGGCCCTGGTGGAGGAACTGGA
GGTCTTGAAACAGAGATGCGCTCACGAAGCTAGCCAGGCTCAGGCCCGAGAGGAGGAGCTGCTGGGCCTG
CAGAACCAGCAAGCCTGTGACCATGCCAAGGAGACCGAGGAGCTGCGCAGCCAGCTGCAGAGCATCAAAC
AGCAACACCAGCAGGCCACGGAACAGATGGGAAAGGAGCAAGAGGCTAATCTCAACCTGAACCAGGAGCT
GCAGGCCAGGCTGCAGACTGTCCTGCGAGAGAAAGAGGAGCTGCTGCAGCTGTCCATGGAGAGAGGCAAG
GTGCTTCAGAACAAACAGGCTGAGATCCGCCAGCTTGAGGAGAAGTTGGAGACAGCAGCCATGGCTAAGA
AGCATGCGCTGGAACGCTTTGAGCAAGAGGCAGTGGCCGTTGATAGCAACCTGAGAGTTCGCGAGCTTCA
GCGCAGGGTAGATGGGATCCAGAAAGCTTATGATGAGCTGCGTCTGCAATCAGAAGCCTTCAAAAAGCAC
AGCCTGGATCTCTTAAGCAAAGAGAGAGAGCTTAATGCCAAACTCCGCCATCTCTTTCCATAA

Translation (370 aa):
MPQEEKTLRMDTPPPDEILGKQNENLQNQDEELGFKEMDGLREALANLRGLSEEEKGEKAMLRSRIQEQS
QLICILKRRSDEALERCQILELLNSELEEKRLQEMEKLKAQSEHIQKLENHFMILASNHEQMIRFKDAHK
SENVKLKEENARLRQENNSLFSQALKDQEAKVLELTTLNKALVEELEVLKQRCAHEASQAQAREEELLGL
QNQQACDHAKETEELRSQLQSIKQQHQQATEQMGKEQEANLNLNQELQARLQTVLREKEELLQLSMERGK
VLQNKQAEIRQLEEKLETAAMAKKHALERFEQEAVAVDSNLRVRELQRRVDGIQKAYDELRLQSEAFKKH
SLDLLSKERELNAKLRHLFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH