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Report for CCDS54681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54681.1 Public Homo sapiens 3 NCEH1 24 110 108 CCDS HistoryNCBI Gene:57552Re-query CCDS DB by CCDS ID:54681.1Re-query CCDS DB by GeneID:57552See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543711.5 ENSP00000443227.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543711.5Link to Ensembl Protein Viewer:ENSP00000443227.1Re-query CCDS DB by Nucleotide ID:ENST00000543711Re-query CCDS DB by Protein ID:ENSP00000443227
Original member Current member NCBI NM_001146277.3 NP_001139749.1 Accepted alive Link to Nucleotide Sequence:NM_001146277.3Link to Protein Sequence:NP_001139749.1Re-query CCDS DB by Nucleotide ID:NM_001146277Re-query CCDS DB by Protein ID:NP_001139749Link to BLAST:NP_001139749.1
Original member Current member NCBI NM_001146278.3 NP_001139750.1 Accepted alive Link to Nucleotide Sequence:NM_001146278.3Link to Protein Sequence:NP_001139750.1Re-query CCDS DB by Nucleotide ID:NM_001146278Re-query CCDS DB by Protein ID:NP_001139750Link to BLAST:NP_001139750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139749.1 275 Q6PIU2-3 275 100% 0 0
NP_001139750.1 275 Q6PIU2-3 275 100% 0 0

Chromosomal Locations for CCDS 54681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 172633475 172634092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172635916 172636087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172645623 172645660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGCTGAGGAATTGAATGCTGTCATTGTTTCCATTGAATACAGGCTAGTTCCAAAGGTTTATTTTCCTG
AGCAAATTCATGATGTTGTACGGGCCACAAAGTATTTCCTGAAGCCAGAAGTCTTACAGAAGTATATGGT
TGATCCAGGCAGAATTTGCATTTCTGGTGACAGTGCTGGTGGAAATCTGGCTGCTGCCCTTGGACAACAG
TTTACTCAAGATGCCAGCCTAAAAAATAAGCTCAAACTACAAGCTTTAATTTATCCAGTTCTTCAAGCTT
TAGATTTTAACACACCATCTTATCAGCAAAATGTGAACACCCCAATCCTGCCCCGCTATGTCATGGTGAA
GTATTGGGTGGACTACTTCAAAGGCAACTATGACTTTGTGCAGGCAATGATCGTTAACAATCACACTTCA
CTTGATGTGGAAGAGGCTGCTGCTGTCAGGGCCCGTCTAAACTGGACATCCCTCTTGCCTGCATCCTTCA
CAAAGAACTACAAGCCTGTTGTACAGACCACAGGCAATGCCAGGATTGTCCAGGAGCTTCCTCAGTTGCT
GGATGCCCGCTCCGCCCCACTCATTGCAGACCAGGCAGTGCTGCAGCTCCTCCCAAAGACCTACATTCTG
ACGTGTGAGCATGATGTCCTCAGAGACGATGGCATCATGTATGCCAAGCGTTTGGAGAGTGCCGGTGTGG
AGGTGACCCTGGATCACTTTGAGGATGGCTTTCACGGATGTATGATTTTCACTAGCTGGCCCACCAACTT
CTCAGTGGGAATCCGGACTAGGAATAGTTACATCAAGTGGCTAGATCAAAACCTGTAA

Translation (275 aa):
MAEELNAVIVSIEYRLVPKVYFPEQIHDVVRATKYFLKPEVLQKYMVDPGRICISGDSAGGNLAAALGQQ
FTQDASLKNKLKLQALIYPVLQALDFNTPSYQQNVNTPILPRYVMVKYWVDYFKGNYDFVQAMIVNNHTS
LDVEEAAAVRARLNWTSLLPASFTKNYKPVVQTTGNARIVQELPQLLDARSAPLIADQAVLQLLPKTYIL
TCEHDVLRDDGIMYAKRLESAGVEVTLDHFEDGFHGCMIFTSWPTNFSVGIRTRNSYIKWLDQNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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