NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5758.1 Public Homo sapiens 7 GPR85 24 110 108 CCDS HistoryNCBI Gene:54329Re-query CCDS DB by CCDS ID:5758.1Re-query CCDS DB by GeneID:54329See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297146.7 ENSP00000297146.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297146.7Link to Ensembl Protein Viewer:ENSP00000297146.2Re-query CCDS DB by Nucleotide ID:ENST00000297146Re-query CCDS DB by Protein ID:ENSP00000297146
Original member Current member EBI ENST00000424100.2 ENSP00000396763.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424100.2Link to Ensembl Protein Viewer:ENSP00000396763.1Re-query CCDS DB by Nucleotide ID:ENST00000424100Re-query CCDS DB by Protein ID:ENSP00000396763
Original member Current member EBI ENST00000449591.2 ENSP00000401178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449591.2Link to Ensembl Protein Viewer:ENSP00000401178.1Re-query CCDS DB by Nucleotide ID:ENST00000449591Re-query CCDS DB by Protein ID:ENSP00000401178
Original member Current member EBI ENST00000610164.1 ENSP00000476863.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610164.1Link to Ensembl Protein Viewer:ENSP00000476863.1Re-query CCDS DB by Nucleotide ID:ENST00000610164Re-query CCDS DB by Protein ID:ENSP00000476863
Original member Current member NCBI NM_001146265.2 NP_001139737.1 Accepted alive Link to Nucleotide Sequence:NM_001146265.2Link to Protein Sequence:NP_001139737.1Re-query CCDS DB by Nucleotide ID:NM_001146265Re-query CCDS DB by Protein ID:NP_001139737Link to BLAST:NP_001139737.1
Original member Current member NCBI NM_001146266.2 NP_001139738.1 Accepted alive Link to Nucleotide Sequence:NM_001146266.2Link to Protein Sequence:NP_001139738.1Re-query CCDS DB by Nucleotide ID:NM_001146266Re-query CCDS DB by Protein ID:NP_001139738Link to BLAST:NP_001139738.1
Original member Current member NCBI NM_001146267.2 NP_001139739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146267.2Link to Protein Sequence:NP_001139739.1Re-query CCDS DB by Nucleotide ID:NM_001146267Re-query CCDS DB by Protein ID:NP_001139739Link to BLAST:NP_001139739.1
Original member Current member NCBI NM_018970.7 NP_061843.3 Accepted alive Link to Nucleotide Sequence:NM_018970.7Link to Protein Sequence:NP_061843.3Re-query CCDS DB by Nucleotide ID:NM_018970Re-query CCDS DB by Protein ID:NP_061843Link to BLAST:NP_061843.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139737.1 370 P60893 370 100% 0 0
NP_001139738.1 370 P60893 370 100% 0 0
NP_001139739.1 370 P60893 370 100% 0 0
NP_061843.3 370 P60893 370 100% 0 0

Chromosomal Locations for CCDS 5758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 113083609 113084721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGCGAACTATAGCCATGCAGCTGACAACATTTTGCAAAATCTCTCGCCTCTAACAGCCTTTCTGAAAC
TGACTTCCTTGGGTTTCATAATAGGAGTCAGCGTGGTGGGCAACCTCCTGATCTCCATTTTGCTAGTGAA
AGATAAGACCTTGCATAGAGCACCTTACTACTTCCTGTTGGATCTTTGCTGTTCAGATATCCTCAGATCT
GCAATTTGTTTCCCATTTGTGTTCAACTCTGTCAAAAATGGTTCTACCTGGACTTATGGGACTCTGACTT
GCAAAGTGATTGCCTTTCTGGGGGTTTTGTCCTGTTTCCACACTGCTTTCATGCTCTTCTGCATCAGTGT
CACCAGATATTTAGCTATCGCCCATCACCGCTTCTATACAAAGAGGCTGACCTTTTGGACGTGTCTGGCT
GTGATCTGTATGGTGTGGACTCTGTCTGTGGCCATGGCATTTCCCCCGGTTTTAGACGTGGGCACTTACT
CATTCATTAGGGAGGAAGATCAATGCACCTTCCAACACCGCTCCTTCAGGGCTAATGATTCCTTAGGATT
TATGCTGCTTCTTGCTCTCATCCTCCTAGCCACACAGCTTGTCTACCTCAAGCTGATATTTTTCGTCCAC
GATCGAAGAAAAATGAAGCCAGTCCAGTTTGTAGCAGCAGTCAGCCAGAACTGGACTTTTCATGGTCCTG
GAGCCAGTGGCCAGGCAGCTGCCAATTGGCTAGCAGGATTTGGAAGGGGTCCCACACCACCCACCTTGCT
GGGCATCAGGCAAAATGCAAACACCACAGGCAGAAGAAGGCTATTGGTCTTAGACGAGTTCAAAATGGAG
AAAAGAATCAGCAGAATGTTCTATATAATGACTTTTCTGTTTCTAACCTTGTGGGGCCCCTACCTGGTGG
CCTGTTATTGGAGAGTTTTTGCAAGAGGGCCTGTAGTACCAGGGGGATTTCTAACAGCTGCTGTCTGGAT
GAGTTTTGCCCAAGCAGGAATCAATCCTTTTGTCTGCATTTTCTCAAACAGGGAGCTGAGGCGCTGTTTC
AGCACAACCCTTCTTTACTGCAGAAAATCCAGGTTACCAAGGGAACCTTACTGTGTTATATGA

Translation (370 aa):
MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRS
AICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLA
VICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVH
DRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKME
KRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCF
STTLLYCRKSRLPREPYCVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH